Search results for the GEO ID: GSE19601 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM488994 | GPL1261 |
|
CD4T_WT_TGF(-)
|
Murine purified wild-type CD4+ T cells stimulated without TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: wild-type
treatment group: without TGF-b for 24hr
|
Gene expression data from wild-type CD4+ T cells cultured without TGF-b for 24hr.
|
Sample_geo_accession | GSM488994
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488994/suppl/GSM488994.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488994/suppl/GSM488994.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
|
GSM488995 | GPL1261 |
|
CD4T_WT_TGF(+)
|
Murine purified wild-type CD4+ T cells stimulated with TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: wild-type
treatment group: with TGF-b for 24hr
|
Gene expression data from wild-type CD4+ T cells cultured with TGF-b for 24hr.
|
Sample_geo_accession | GSM488995
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488995/suppl/GSM488995.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488995/suppl/GSM488995.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
|
GSM488996 | GPL1261 |
|
CD4T_S2_TGF(-)
|
Murine purified Smad2-deficient CD4+ T cells stimulated without TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: Smad2del/del
treatment group: without TGF-b for 24hr
|
Gene expression data from Smad2-deficient CD4+ T cells cultured without TGF-b for 24hr.
|
Sample_geo_accession | GSM488996
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488996/suppl/GSM488996.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488996/suppl/GSM488996.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
|
GSM488997 | GPL1261 |
|
CD4T_S2_TGF(+)
|
Murine purified Smad2-deficient CD4+ T cells stimulated with TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: Smad2del/del
treatment group: with TGF-b for 24hr
|
Gene expression data from Smad2-deficient CD4+ T cells cultured with TGF-b for 24hr.
|
Sample_geo_accession | GSM488997
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488997/suppl/GSM488997.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488997/suppl/GSM488997.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
|
GSM488998 | GPL1261 |
|
CD4T_S3_TGF(-)
|
Murine purified Smad3-deficient CD4+ T cells stimulated without TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: Smad3-/-
treatment group: without TGF-b for 24hr
|
Gene expression data from Smad3-deficient CD4+ T cells cultured without TGF-b for 24hr.
|
Sample_geo_accession | GSM488998
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488998/suppl/GSM488998.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488998/suppl/GSM488998.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
|
GSM488999 | GPL1261 |
|
CD4T_S3_TGF(+)
|
Murine purified Smad3-deficient CD4+ T cells stimulated with TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: Smad3-/-
treatment group: with TGF-b for 24hr
|
Gene expression data from Smad3-deficient CD4+ T cells cultured with TGF-b for 24hr.
|
Sample_geo_accession | GSM488999
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488999/suppl/GSM488999.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM488nnn/GSM488999/suppl/GSM488999.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
|
GSM489000 | GPL1261 |
|
CD4T_S23h_TGF(-)
|
Murine purified Smad2-deficient/Smad3-hetero CD4+ T cells stimulated without TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: Smad2del/del, Smad3+/-
treatment group: without TGF-b for 24hr
|
Gene expression data from Smad2-deficient/Smad3-hetero CD4+ T cells cultured without TGF-b for 24hr.
|
Sample_geo_accession | GSM489000
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM489nnn/GSM489000/suppl/GSM489000.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM489nnn/GSM489000/suppl/GSM489000.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
|
GSM489001 | GPL1261 |
|
CD4T_S23h_TGF(+)
|
Murine purified Smad2-deficient/Smad3-hetero CD4+ T cells stimulated with TGF-b for 24hr
|
strain: C57BL/6J
cell type: CD4+ T cells
genome/variation: Smad2del/del, Smad3+/-
treatment group: with TGF-b for 24hr
|
Gene expression data from Smad2-deficient/Smad3-hetero CD4+ T cells cultured with TGF-b for 24hr.
|
Sample_geo_accession | GSM489001
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Dec 22 2009
| Sample_last_update_date | Jun 22 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | FACS-sorted CD4+CD25-CD44loCD62Lhi T cells (3 x 10^6 cells) were stimulated with plate-bound anti-CD3e (1ug/ml), soluble anti-CD28 (1ug/ml), anti-IFN-g (10ug/ml), anti-IL-4 (10ug/ml) and recombinant murine IL-2 (10ng/ml) in the absence or presence of 2ng/ml of TGF-b for 24 hr.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tomohito,,Takimoto
| Sample_contact_email | takimoto@bioreg.kyushu-u.ac.jp
| Sample_contact_phone | +81-3-5363-3483
| Sample_contact_fax | +81-3-5360-1508
| Sample_contact_department | Microbiology and Immunology
| Sample_contact_institute | Keio University School of Medicine
| Sample_contact_address | 35 Shinanomachi
| Sample_contact_city | Shinjyuku-ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 160-8582
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM489nnn/GSM489001/suppl/GSM489001.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM489nnn/GSM489001/suppl/GSM489001.CHP.gz
| Sample_series_id | GSE19601
| Sample_data_row_count | 45101
| |
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