Search results for the GEO ID: GSE19640  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM490067 | GPL1261 |
|
Wild Type, sample 1
|
Proximal tubules from 20-week-old wild-type mice
|
tissue: kidney proximal tubule
genotype: wild type
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
WT_1
|
| Sample_geo_accession | GSM490067
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490067/suppl/GSM490067.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490068 | GPL1261 |
|
Wild Type, sample 2
|
Proximal tubules from 20-week-old wild-type mice
|
tissue: kidney proximal tubule
genotype: wild type
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
WT_2
|
| Sample_geo_accession | GSM490068
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490068/suppl/GSM490068.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490069 | GPL1261 |
|
Wild Type, sample 3
|
Proximal tubules from 20-week-old wild-type mice
|
tissue: kidney proximal tubule
genotype: wild type
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
WT_3
|
| Sample_geo_accession | GSM490069
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490069/suppl/GSM490069.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490070 | GPL1261 |
|
Catalase-Tg, sample 1
|
Proximal tubules from 20-week-old catalase-Tg mice
|
tissue: kidney proximal tubule
genotype: catalase-Tg
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
WT_Cat_1
|
| Sample_geo_accession | GSM490070
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490070/suppl/GSM490070.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490071 | GPL1261 |
|
Catalase-Tg, sample 2
|
Proximal tubules from 20-week-old catalase-Tg mice
|
tissue: kidney proximal tubule
genotype: catalase-Tg
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
WT_Cat_2
|
| Sample_geo_accession | GSM490071
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490071/suppl/GSM490071.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490072 | GPL1261 |
|
Catalase-Tg, sample 3
|
Proximal tubules from 20-week-old catalase-Tg mice
|
tissue: kidney proximal tubule
genotype: catalase-Tg
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
WT_Cat_3
|
| Sample_geo_accession | GSM490072
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490072/suppl/GSM490072.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490073 | GPL1261 |
|
dB/dB, sample 1
|
Proximal tubules from 20-week-old dB/dB mice
|
tissue: kidney proximal tubule
genotype: dB/dB
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
DB_1
|
| Sample_geo_accession | GSM490073
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490073/suppl/GSM490073.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490074 | GPL1261 |
|
dB/dB, sample 2
|
Proximal tubules from 20-week-old dB/dB mice
|
tissue: kidney proximal tubule
genotype: dB/dB
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
DB_2
|
| Sample_geo_accession | GSM490074
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490074/suppl/GSM490074.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490075 | GPL1261 |
|
dB/dB, sample 3
|
Proximal tubules from 20-week-old dB/dB mice
|
tissue: kidney proximal tubule
genotype: dB/dB
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
DB_3
|
| Sample_geo_accession | GSM490075
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490075/suppl/GSM490075.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490076 | GPL1261 |
|
dB/dB Catalase-Tg, sample 1
|
Proximal tubules from 20-week-old dB/dB catalase-Tg mice
|
tissue: kidney proximal tubule
genotype: dB/dB catalase-Tg
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
DB_CAT_1
|
| Sample_geo_accession | GSM490076
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490076/suppl/GSM490076.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490077 | GPL1261 |
|
dB/dB Catalase-Tg, sample 2
|
Proximal tubules from 20-week-old dB/dB catalase-Tg mice
|
tissue: kidney proximal tubule
genotype: dB/dB catalase-Tg
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
DB_CAT_2
|
| Sample_geo_accession | GSM490077
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490077/suppl/GSM490077.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
| | |
|
GSM490078 | GPL1261 |
|
dB/dB Catalase-Tg, sample 3
|
Proximal tubules from 20-week-old dB/dB catalase-Tg mice
|
tissue: kidney proximal tubule
genotype: dB/dB catalase-Tg
age: 20 weeks
|
Gene expression data from proximal tubules of 20-week-old mice.
DB_CAT_3
|
| Sample_geo_accession | GSM490078
| | Sample_status | Public on Dec 24 2009
| | Sample_submission_date | Dec 23 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Proximal tubules were isolated by Percoll centrifugation.
| | Sample_growth_protocol_ch1 | 20-week-old mice were fed a normal diet and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with limma packages from bioconductor softwares suite, using the GC-RMA method of normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Godin
| | Sample_contact_email | nicolas.godin@gmail.com
| | Sample_contact_phone | 514 890-8000 -15596
| | Sample_contact_institute | Université de Montréal
| | Sample_contact_address | 3850 St-Urbain
| | Sample_contact_city | Montreal
| | Sample_contact_state | QC
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490078/suppl/GSM490078.CEL.gz
| | Sample_series_id | GSE19640
| | Sample_data_row_count | 45101
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