Search results for the GEO ID: GSE19650  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM490138 | GPL570 |
|
normal main pancreatic duct 1
|
microdissected epithelial cells from normal main pancreatic duct 1
|
tissue: pancreas
cell type: epithelial cells
disease status: normal
|
Gene expression data from microdissected epithelial cells of normal main pancreatic duct
|
| Sample_geo_accession | GSM490138
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490138/suppl/GSM490138.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490139 | GPL570 |
|
normal main pancreatic duct 2
|
microdissected epithelial cells from normal main pancreatic duct 2
|
tissue: pancreas
cell type: epithelial cells
disease status: normal
|
Gene expression data from microdissected epithelial cells of normal main pancreatic duct
|
| Sample_geo_accession | GSM490139
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490139/suppl/GSM490139.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490140 | GPL570 |
|
normal main pancreatic duct 3
|
microdissected epithelial cells from normal main pancreatic duct 3
|
tissue: pancreas
cell type: epithelial cells
disease status: normal
|
Gene expression data from microdissected epithelial cells of normal main pancreatic duct
|
| Sample_geo_accession | GSM490140
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490140/suppl/GSM490140.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490141 | GPL570 |
|
normal main pancreatic duct 4
|
microdissected epithelial cells from normal main pancreatic duct 4
|
tissue: pancreas
cell type: epithelial cells
disease status: normal
|
Gene expression data from microdissected epithelial cells of normal main pancreatic duct
|
| Sample_geo_accession | GSM490141
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490141/suppl/GSM490141.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490142 | GPL570 |
|
normal main pancreatic duct 5
|
microdissected epithelial cells from normal main pancreatic duct 5
|
tissue: pancreas
cell type: epithelial cells
disease status: normal
|
Gene expression data from microdissected epithelial cells of normal main pancreatic duct
|
| Sample_geo_accession | GSM490142
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490142/suppl/GSM490142.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490143 | GPL570 |
|
normal main pancreatic duct 6
|
microdissected epithelial cells from normal main pancreatic duct 6
|
tissue: pancreas
cell type: epithelial cells
disease status: normal
|
Gene expression data from microdissected epithelial cells of normal main pancreatic duct
|
| Sample_geo_accession | GSM490143
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490143/suppl/GSM490143.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490144 | GPL570 |
|
normal main pancreatic duct 7
|
microdissected epithelial cells from normal main pancreatic duct 7
|
tissue: pancreas
cell type: epithelial cells
disease status: normal
|
Gene expression data from microdissected epithelial cells of normal main pancreatic duct
|
| Sample_geo_accession | GSM490144
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490144/suppl/GSM490144.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490145 | GPL570 |
|
IPMA 1
|
microdissected epithelial cells from IPMA 1
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous adenoma (IPMA)
|
Gene expression data from microdissected epithelial cells of IPMA
|
| Sample_geo_accession | GSM490145
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490145/suppl/GSM490145.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490146 | GPL570 |
|
IPMA 2
|
microdissected epithelial cells from IPMA 2
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous adenoma (IPMA)
|
Gene expression data from microdissected epithelial cells of IPMA
|
| Sample_geo_accession | GSM490146
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490146/suppl/GSM490146.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490147 | GPL570 |
|
IPMA 3
|
microdissected epithelial cells from IPMA 3
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous adenoma (IPMA)
|
Gene expression data from microdissected epithelial cells of IPMA
|
| Sample_geo_accession | GSM490147
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490147/suppl/GSM490147.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490148 | GPL570 |
|
IPMA 4
|
microdissected epithelial cells from IPMA 4
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous adenoma (IPMA)
|
Gene expression data from microdissected epithelial cells of IPMA
|
| Sample_geo_accession | GSM490148
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490148/suppl/GSM490148.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490149 | GPL570 |
|
IPMA 5
|
microdissected epithelial cells from IPMA 5
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous adenoma (IPMA)
|
Gene expression data from microdissected epithelial cells of IPMA
|
| Sample_geo_accession | GSM490149
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490149/suppl/GSM490149.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490150 | GPL570 |
|
IPMA 6
|
microdissected epithelial cells from IPMA 6
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous adenoma (IPMA)
|
Gene expression data from microdissected epithelial cells of IPMA
|
| Sample_geo_accession | GSM490150
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490150/suppl/GSM490150.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490151 | GPL570 |
|
IPMC 1
|
microdissected epithelial cells from IPMC 1
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous carcinoma (IPMC)
|
Gene expression data from microdissected epithelial cells of IPMC
|
| Sample_geo_accession | GSM490151
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490151/suppl/GSM490151.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490152 | GPL570 |
|
IPMC 2
|
microdissected epithelial cells from IPMC 2
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous carcinoma (IPMC)
|
Gene expression data from microdissected epithelial cells of IPMC
|
| Sample_geo_accession | GSM490152
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490152/suppl/GSM490152.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490153 | GPL570 |
|
IPMC 3
|
microdissected epithelial cells from IPMC 3
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous carcinoma (IPMC)
|
Gene expression data from microdissected epithelial cells of IPMC
|
| Sample_geo_accession | GSM490153
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490153/suppl/GSM490153.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490154 | GPL570 |
|
IPMC 4
|
microdissected epithelial cells from IPMC 4
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous carcinoma (IPMC)
|
Gene expression data from microdissected epithelial cells of IPMC
|
| Sample_geo_accession | GSM490154
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490154/suppl/GSM490154.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490155 | GPL570 |
|
IPMC 5
|
microdissected epithelial cells from IPMC 5
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous carcinoma (IPMC)
|
Gene expression data from microdissected epithelial cells of IPMC
|
| Sample_geo_accession | GSM490155
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490155/suppl/GSM490155.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490156 | GPL570 |
|
IPMC 6
|
microdissected epithelial cells from IPMC 6
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous carcinoma (IPMC)
|
Gene expression data from microdissected epithelial cells of IPMC
|
| Sample_geo_accession | GSM490156
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490156/suppl/GSM490156.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490157 | GPL570 |
|
Invasive cancer originating in IPMN 1
|
microdissected epithelial cells from invasive cancer originating in IPMN 1
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous neoplasm (IPMN)
|
Gene expression data from microdissected epithelial cells of invasive cancer originating in IPMN
|
| Sample_geo_accession | GSM490157
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490157/suppl/GSM490157.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490158 | GPL570 |
|
Invasive cancer originating in IPMN 2
|
microdissected epithelial cells from invasive cancer originating in IPMN 2
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous neoplasm (IPMN)
|
Gene expression data from microdissected epithelial cells of invasive cancer originating in IPMN
|
| Sample_geo_accession | GSM490158
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490158/suppl/GSM490158.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
GSM490159 | GPL570 |
|
Invasive cancer originating in IPMN 3
|
microdissected epithelial cells from invasive cancer originating in IPMN 3
|
tissue: pancreas
cell type: epithelial cells
disease status: intraductal papillary-mucinous neoplasm (IPMN)
|
Gene expression data from microdissected epithelial cells of invasive cancer originating in IPMN
|
| Sample_geo_accession | GSM490159
| | Sample_status | Public on Dec 23 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was obtained with Trizol extraction and purified with RNeasy Micro Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30 ng total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 8000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (GCOS1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nobuyoshi,,Hiraoka
| | Sample_contact_email | nhiraoka@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-2463
| | Sample_contact_department | Pathology Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490159/suppl/GSM490159.CEL.gz
| | Sample_series_id | GSE19650
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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