Search results for the GEO ID: GSE19652  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM490173 | GPL1355 |
|
PDSAg_1
|
T cell line from PDSAg_1
|
strain: LEW RT1l
cell type: T cell lines
disease model: Experimental autoimmune uveitis (EAU)
eau-inducing antigen: S-antigen peptide PDSAg
|
Gene expression data from independent T cell lines from PDSAg treated rats.
|
| Sample_geo_accession | GSM490173
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Inbred rats were purchased from Janvier (Le Genest St. Isle, France) and were used in all experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 20µg of total RNA were reverse-transcribed and used for biotinylation employing the GeneChip Expression 3' amplification one-cycle target labeling and control kit (Affymetrix, Sunnydale, CA).
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). Log2 normalized ChipInspector results are provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490173/suppl/GSM490173.CEL.gz
| | Sample_series_id | GSE19652
| | Sample_data_row_count | 0
| | |
|
GSM490174 | GPL1355 |
|
PDSAg_2
|
T cell line from PDSAg_2
|
strain: LEW RT1l
cell type: T cell lines
disease model: Experimental autoimmune uveitis (EAU)
eau-inducing antigen: S-antigen peptide PDSAg
|
Gene expression data from independent T cell lines from PDSAg treated rats.
|
| Sample_geo_accession | GSM490174
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Inbred rats were purchased from Janvier (Le Genest St. Isle, France) and were used in all experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 20µg of total RNA were reverse-transcribed and used for biotinylation employing the GeneChip Expression 3' amplification one-cycle target labeling and control kit (Affymetrix, Sunnydale, CA).
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). Log2 normalized ChipInspector results provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490174/suppl/GSM490174.CEL.gz
| | Sample_series_id | GSE19652
| | Sample_data_row_count | 0
| | |
|
GSM490175 | GPL1355 |
|
PDSAg_3
|
T cell line from PDSAg_3
|
strain: LEW RT1l
cell type: T cell lines
disease model: Experimental autoimmune uveitis (EAU)
eau-inducing antigen: S-antigen peptide PDSAg
|
Gene expression data from independent T cell lines from PDSAg treated rats.
|
| Sample_geo_accession | GSM490175
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Inbred rats were purchased from Janvier (Le Genest St. Isle, France) and were used in all experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 20µg of total RNA were reverse-transcribed and used for biotinylation employing the GeneChip Expression 3' amplification one-cycle target labeling and control kit (Affymetrix, Sunnydale, CA).
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). Log2 normalized ChipInspector results provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490175/suppl/GSM490175.CEL.gz
| | Sample_series_id | GSE19652
| | Sample_data_row_count | 0
| | |
|
GSM490176 | GPL1355 |
|
R14_1
|
T cell line from R14_1
|
strain: LEW RT1l
cell type: T cell lines
disease model: Experimental autoimmune uveitis (EAU)
eau-inducing antigen: R14 (a peptide derived from interphotoreceptor retinoid-binding protein)
|
Gene expression data from independent T cell lines from R14 treated rats.
|
| Sample_geo_accession | GSM490176
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Inbred rats were purchased from Janvier (Le Genest St. Isle, France) and were used in all experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 20µg of total RNA were reverse-transcribed and used for biotinylation employing the GeneChip Expression 3' amplification one-cycle target labeling and control kit (Affymetrix, Sunnydale, CA).
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). Log2 normalized ChipInspector results provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490176/suppl/GSM490176.CEL.gz
| | Sample_series_id | GSE19652
| | Sample_data_row_count | 0
| | |
|
GSM490177 | GPL1355 |
|
R14_2
|
T cell line from R14_2
|
strain: LEW RT1l
cell type: T cell lines
disease model: Experimental autoimmune uveitis (EAU)
eau-inducing antigen: R14 (a peptide derived from interphotoreceptor retinoid-binding protein)
|
Gene expression data from independent T cell lines from R14 treated rats.
|
| Sample_geo_accession | GSM490177
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Inbred rats were purchased from Janvier (Le Genest St. Isle, France) and were used in all experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 20µg of total RNA were reverse-transcribed and used for biotinylation employing the GeneChip Expression 3' amplification one-cycle target labeling and control kit (Affymetrix, Sunnydale, CA).
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). Log2 normalized ChipInspector results provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490177/suppl/GSM490177.CEL.gz
| | Sample_series_id | GSE19652
| | Sample_data_row_count | 0
| | |
|
GSM490178 | GPL1355 |
|
R14_3
|
T cell line from R14_3
|
strain: LEW RT1l
cell type: T cell lines
disease model: Experimental autoimmune uveitis (EAU)
eau-inducing antigen: R14 (a peptide derived from interphotoreceptor retinoid-binding protein)
|
Gene expression data from independent T cell lines from R14 treated rats.
|
| Sample_geo_accession | GSM490178
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | Dec 24 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Inbred rats were purchased from Janvier (Le Genest St. Isle, France) and were used in all experiments.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 20µg of total RNA were reverse-transcribed and used for biotinylation employing the GeneChip Expression 3' amplification one-cycle target labeling and control kit (Affymetrix, Sunnydale, CA).
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). Log2 normalized ChipInspector results provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM490nnn/GSM490178/suppl/GSM490178.CEL.gz
| | Sample_series_id | GSE19652
| | Sample_data_row_count | 0
| | |
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