Search results for the GEO ID: GSE19687  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM491528 | GPL1261 |
|
IP-1a
|
shQk1 inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491528
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491528/suppl/GSM491528_RD2008041748.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491529 | GPL1261 |
|
IP-1b
|
shQk1 inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491529
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491529/suppl/GSM491529_RD2008041749.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491530 | GPL1261 |
|
IP-1c
|
shQk1 inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491530
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491530/suppl/GSM491530_RD2008041750.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491531 | GPL1261 |
|
IP-2a
|
shQk2 inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491531
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491531/suppl/GSM491531_RD2008041751.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491532 | GPL1261 |
|
IP-2b
|
shQk2 inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491532
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491532/suppl/GSM491532_RD2008041752.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491533 | GPL1261 |
|
IP-2c
|
shQk2 inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491533
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491533/suppl/GSM491533_RD2008041753.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491534 | GPL1261 |
|
IP-Ga
|
shGFP inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491534
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491534/suppl/GSM491534_RD2008041754.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491535 | GPL1261 |
|
IP-Gb
|
shGFP inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491535
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491535/suppl/GSM491535_RD2008041755.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
|
GSM491536 | GPL1261 |
|
IP-Gc
|
shGFP inf. Ink/Arf/PTEN ko astroc.
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
tumor stage: Non-Tumor
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491536
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491536/suppl/GSM491536_RD2008041756.CEL.gz
| | Sample_series_id | GSE19687
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 45101
| | |
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