Search results for the GEO ID: GSE19689  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM491541 | GPL1261 |
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IP-C-1
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QK-knockdown Ink4a/Arf-/- Pten-/- mouse astrocytes transduced with a scrambled non-targeting microRNA (miR-NT)
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tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
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Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491541
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with R Bioconductor affy package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491541/suppl/GSM491541_RD2009091033.CEL.gz
| | Sample_series_id | GSE19689
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 39083
| | |
|
GSM491542 | GPL1261 |
|
IP-C-2
|
QK-knockdown Ink4a/Arf-/- Pten-/- mouse astrocytes transduced with a scrambled non-targeting microRNA (miR-NT)
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491542
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with R Bioconductor affy package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491542/suppl/GSM491542_RD2009091034.CEL.gz
| | Sample_series_id | GSE19689
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 39083
| | |
|
GSM491543 | GPL1261 |
|
IP-20-1
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QK-knockdown Ink4a/Arf-/- Pten-/- mouse astrocytes transduced with miR-20a
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491543
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with R Bioconductor affy package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491543/suppl/GSM491543_RD2009091035.CEL.gz
| | Sample_series_id | GSE19689
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 39083
| | |
|
GSM491544 | GPL1261 |
|
IP-20-2
|
QK-knockdown Ink4a/Arf-/- Pten-/- mouse astrocytes transduced with miR-20a
|
tumor tissue source: Cell line: 1st deg. culture
tumor organ site: Brain
pathological diagonosis: Normal
|
Ink4a/Arf-/- Pten-/- primary mouse astrocytes
|
| Sample_geo_accession | GSM491544
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 28 2009
| | Sample_last_update_date | Dec 29 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Micro-to-Midi Total RNA Purification System (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with R Bioconductor affy package
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hailei,,Zhang
| | Sample_contact_email | hailei_zhang@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491544/suppl/GSM491544_RD2009091036.CEL.gz
| | Sample_series_id | GSE19689
| | Sample_series_id | GSE19693
| | Sample_data_row_count | 39083
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