Search results for the GEO ID: GSE19699  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM491643 | GPL96 |
|
Adult type II cells day 0, lung #1
|
Adult lung type II cells
|
growth protocol: freshly isolated cells
time: Day 0
|
gene expression data from freshly isolated cells
|
| Sample_geo_accession | GSM491643
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491643/suppl/GSM491643.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491644 | GPL96 |
|
Adult type II cells day 5 control, lung #1
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: control
time: Day 5
|
gene expession data from cells cultured under control conditions
|
| Sample_geo_accession | GSM491644
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491644/suppl/GSM491644.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491645 | GPL96 |
|
Adult type II cells day 5 treated, lung #1
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: DCI
time: Day 5
|
gene expession data from cells cultured in presence of DCI
|
| Sample_geo_accession | GSM491645
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491645/suppl/GSM491645.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491646 | GPL96 |
|
Adult type II cells day 0, lung #2
|
Adult lung type II cells
|
growth protocol: freshly isolated cells
time: Day 0
|
gene expression data from freshly isolated cells
|
| Sample_geo_accession | GSM491646
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491646/suppl/GSM491646.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491647 | GPL96 |
|
Adult type II cells day 5 control, lung #2
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: control
time: Day 5
|
gene expession data from cells cultured under control conditions
|
| Sample_geo_accession | GSM491647
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491647/suppl/GSM491647.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491648 | GPL96 |
|
Adult type II cells day 5 treated, lung #2
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: DCI
time: Day 5
|
gene expession data from cells cultured in presence of DCI
|
| Sample_geo_accession | GSM491648
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491648/suppl/GSM491648.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491649 | GPL96 |
|
Adult type II cells day 0, lung #3
|
Adult lung type II cells
|
growth protocol: freshly isolated cells
time: Day 0
|
gene expression data from freshly isolated cells
|
| Sample_geo_accession | GSM491649
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491649/suppl/GSM491649.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491650 | GPL96 |
|
Adult type II cells day 5 control, lung #3
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: control
time: Day 5
|
gene expession data from cells cultured under control conditions
|
| Sample_geo_accession | GSM491650
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491650/suppl/GSM491650.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491651 | GPL96 |
|
Adult type II cells day 5 treated, lung #3
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: DCI
time: Day 5
|
gene expession data from cells cultured in presence of DCI
|
| Sample_geo_accession | GSM491651
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491651/suppl/GSM491651.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491652 | GPL96 |
|
Adult type II cells day 0, lung #4
|
Adult lung type II cells
|
growth protocol: freshly isolated cells
time: Day 0
|
gene expression data from freshly isolated cells
|
| Sample_geo_accession | GSM491652
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491652/suppl/GSM491652.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491653 | GPL96 |
|
Adult type II cells day 5 control, lung #4
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: control
time: Day 5
|
gene expession data from cells cultured under control conditions
|
| Sample_geo_accession | GSM491653
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491653/suppl/GSM491653.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491654 | GPL96 |
|
Adult type II cells day 5 treated, lung #4
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: DCI
time: Day 5
|
gene expession data from cells cultured in presence of DCI
|
| Sample_geo_accession | GSM491654
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491654/suppl/GSM491654.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491655 | GPL96 |
|
Adult type II cells day 0, lung #5
|
Adult lung type II cells
|
growth protocol: freshly isolated cells
time: Day 0
|
gene expression data from freshly isolated cells
|
| Sample_geo_accession | GSM491655
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491655/suppl/GSM491655.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491656 | GPL96 |
|
Adult type II cells day 5 control, lung #5
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: control
time: Day 5
|
gene expession data from cells cultured under control conditions
|
| Sample_geo_accession | GSM491656
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491656/suppl/GSM491656.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
|
GSM491657 | GPL96 |
|
Adult type II cells day 5 treated, lung #5
|
Adult lung type II cells
|
growth protocol: cells cultured 5 days
agent: DCI
time: Day 5
|
gene expession data from cells cultured in presence of DCI
|
| Sample_geo_accession | GSM491657
| | Sample_status | Public on Dec 30 2009
| | Sample_submission_date | Dec 29 2009
| | Sample_last_update_date | Dec 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cultured cells were exposed to dexamethasone plus 8-Br-cAMP plus isobutylmethylxanthine (DCI-treated) or diluent (control).
| | Sample_growth_protocol_ch1 | Fetal cells were cultured 5 days with or without DCI. Adult cells were harvested after isolation and also cultured 5 days with or without DCI.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from control and DCI-treated cells using RNA STAT (Tel-Test, Inc., Friendswood, TX) per the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed as per Affymetrix protocol.
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Philip,L,Ballard
| | Sample_contact_email | ballardp@peds.ucsf.edu
| | Sample_contact_phone | 415 476-4193
| | Sample_contact_fax | 415 476-3586
| | Sample_contact_department | Neonatology
| | Sample_contact_institute | UCSF
| | Sample_contact_address | 3333 California St
| | Sample_contact_city | San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94118
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM491nnn/GSM491657/suppl/GSM491657.CEL.gz
| | Sample_series_id | GSE19699
| | Sample_data_row_count | 22283
| | |
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(2 groups will be compared at a time) |
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