Search results for the GEO ID: GSE19811  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM494796 | GPL96 |
|
HIV-infected patient 1, biological replicate 1
|
Adipose tissue from HIV-infected patient
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from HIV-infected patient
|
| Sample_geo_accession | GSM494796
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494796/suppl/GSM494796.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494797 | GPL96 |
|
HIV-infected patient 3, biological replicate 2
|
Adipose tissue from HIV-infected patient
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from HIV-infected patient
|
| Sample_geo_accession | GSM494797
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494797/suppl/GSM494797.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494798 | GPL96 |
|
HIV-infected patient 4, biological replicate 3
|
Adipose tissue from HIV-infected patient
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from HIV-infected patient
|
| Sample_geo_accession | GSM494798
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494798/suppl/GSM494798.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494799 | GPL96 |
|
HIV-infected patient H2, biological replicate 4
|
Adipose tissue from HIV-infected patient
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from HIV-infected patient
|
| Sample_geo_accession | GSM494799
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494799/suppl/GSM494799.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494800 | GPL96 |
|
HIV-infected patient I1, biological replicate 5
|
Adipose tissue from HIV-infected patient
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tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from HIV-infected patient
|
| Sample_geo_accession | GSM494800
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494800/suppl/GSM494800.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494801 | GPL96 |
|
HIV-infected patient J2, biological replicate 6
|
Adipose tissue from HIV-infected patient
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from HIV-infected patient
|
| Sample_geo_accession | GSM494801
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494801/suppl/GSM494801.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494802 | GPL96 |
|
HIV-infected patient K2, biological replicate 7
|
Adipose tissue from HIV-infected patient
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from HIV-infected patient
|
| Sample_geo_accession | GSM494802
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494802/suppl/GSM494802.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494803 | GPL96 |
|
control subject A2, biological replicate 1
|
Adipose tissue from Control subject
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from control subject
|
| Sample_geo_accession | GSM494803
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494803/suppl/GSM494803.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494804 | GPL96 |
|
control subject B2, biological replicate 2
|
Adipose tissue from Control subject
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from control subject
|
| Sample_geo_accession | GSM494804
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494804/suppl/GSM494804.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494805 | GPL96 |
|
control subject C1_2, biological replicate 3
|
Adipose tissue from Control subject
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from control subject
|
| Sample_geo_accession | GSM494805
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494805/suppl/GSM494805.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494806 | GPL96 |
|
control subject C1, biological replicate 4
|
Adipose tissue from Control subject
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from control subject
|
| Sample_geo_accession | GSM494806
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494806/suppl/GSM494806.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494807 | GPL96 |
|
control subject C2, biological replicate 5
|
Adipose tissue from Control subject
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from control subject
|
| Sample_geo_accession | GSM494807
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494807/suppl/GSM494807.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
| | |
|
GSM494808 | GPL96 |
|
control subject D1, biological replicate 6
|
Adipose tissue from Control subject
|
tissue: Subcutaneous Abdominal Adipose tissue
|
Gene expression data from control subject
|
| Sample_geo_accession | GSM494808
| | Sample_status | Public on Jan 09 2010
| | Sample_submission_date | Jan 08 2010
| | Sample_last_update_date | Jan 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions (RNeasy lipid tissue Mini kit ).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 1 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 80 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Véronique,,Avettand-Fenoel
| | Sample_contact_institute | INSERM U567
| | Sample_contact_address | 22 rue Méchain
| | Sample_contact_city | Paris
| | Sample_contact_zip/postal_code | 75014
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM494nnn/GSM494808/suppl/GSM494808.CEL.gz
| | Sample_series_id | GSE19811
| | Sample_data_row_count | 22283
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