Search results for the GEO ID: GSE19925  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM498088 | GPL1261 |
|
mammary stoma-4w-KO-rep1
|
Rarb null mammary stroma
|
tisue: cleared mammary fat pad
genotype: Rarb -/-
age: four weeks
|
Gene expression data from young mice with ErbB2.
|
| Sample_geo_accession | GSM498088
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Jan 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with FlexArray software developed by Genome Quebec Center at McGill University and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xingxing,,LIU
| | Sample_contact_laboratory | GiGuere
| | Sample_contact_department | Biochemistry, GCC
| | Sample_contact_institute | McGill University
| | Sample_contact_address | 1160 Pine Ave
| | Sample_contact_city | Montréal
| | Sample_contact_state | QC
| | Sample_contact_zip/postal_code | H3A 1A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM498nnn/GSM498088/suppl/GSM498088.CEL.gz
| | Sample_series_id | GSE19925
| | Sample_data_row_count | 45101
| | |
|
GSM498089 | GPL1261 |
|
mammary stoma-4w-KO-rep2
|
Rarb null mammary stroma
|
tisue: cleared mammary fat pad
genotype: Rarb -/-
age: four weeks
|
Gene expression data from young mice with ErbB2.
|
| Sample_geo_accession | GSM498089
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Jan 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with FlexArray software developed by Genome Quebec Center at McGill University and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xingxing,,LIU
| | Sample_contact_laboratory | GiGuere
| | Sample_contact_department | Biochemistry, GCC
| | Sample_contact_institute | McGill University
| | Sample_contact_address | 1160 Pine Ave
| | Sample_contact_city | Montréal
| | Sample_contact_state | QC
| | Sample_contact_zip/postal_code | H3A 1A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM498nnn/GSM498089/suppl/GSM498089.CEL.gz
| | Sample_series_id | GSE19925
| | Sample_data_row_count | 45101
| | |
|
GSM498090 | GPL1261 |
|
mammary stoma-4w-KO-rep3
|
Rarb null mammary stroma
|
tisue: cleared mammary fat pad
genotype: Rarb -/-
age: four weeks
|
Gene expression data from young mice with ErbB2.
|
| Sample_geo_accession | GSM498090
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Jan 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with FlexArray software developed by Genome Quebec Center at McGill University and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xingxing,,LIU
| | Sample_contact_laboratory | GiGuere
| | Sample_contact_department | Biochemistry, GCC
| | Sample_contact_institute | McGill University
| | Sample_contact_address | 1160 Pine Ave
| | Sample_contact_city | Montréal
| | Sample_contact_state | QC
| | Sample_contact_zip/postal_code | H3A 1A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM498nnn/GSM498090/suppl/GSM498090.CEL.gz
| | Sample_series_id | GSE19925
| | Sample_data_row_count | 45101
| | |
|
GSM498091 | GPL1261 |
|
mammary stoma-4w-wt-rep1
|
wild type mammary stroma
|
tisue: cleared mammary fat pad
genotype: Rarb +/+
age: four weeks
|
Gene expression data from young mice with ErbB2.
|
| Sample_geo_accession | GSM498091
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Jan 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with FlexArray software developed by Genome Quebec Center at McGill University and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xingxing,,LIU
| | Sample_contact_laboratory | GiGuere
| | Sample_contact_department | Biochemistry, GCC
| | Sample_contact_institute | McGill University
| | Sample_contact_address | 1160 Pine Ave
| | Sample_contact_city | Montréal
| | Sample_contact_state | QC
| | Sample_contact_zip/postal_code | H3A 1A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM498nnn/GSM498091/suppl/GSM498091.CEL.gz
| | Sample_series_id | GSE19925
| | Sample_data_row_count | 45101
| | |
|
GSM498092 | GPL1261 |
|
mammary stoma-4w-wt-rep2
|
wild type mammary stroma
|
tisue: cleared mammary fat pad
genotype: Rarb +/+
age: four weeks
|
Gene expression data from young mice with ErbB2.
|
| Sample_geo_accession | GSM498092
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Jan 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with FlexArray software developed by Genome Quebec Center at McGill University and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xingxing,,LIU
| | Sample_contact_laboratory | GiGuere
| | Sample_contact_department | Biochemistry, GCC
| | Sample_contact_institute | McGill University
| | Sample_contact_address | 1160 Pine Ave
| | Sample_contact_city | Montréal
| | Sample_contact_state | QC
| | Sample_contact_zip/postal_code | H3A 1A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM498nnn/GSM498092/suppl/GSM498092.CEL.gz
| | Sample_series_id | GSE19925
| | Sample_data_row_count | 45101
| | |
|
GSM498093 | GPL1261 |
|
mammary stoma-4w-wt-rep3
|
wild type mammary stroma
|
tisue: cleared mammary fat pad
genotype: Rarb +/+
age: four weeks
|
Gene expression data from young mice with ErbB2.
|
| Sample_geo_accession | GSM498093
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Jan 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized to Affymetrix GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with FlexArray software developed by Genome Quebec Center at McGill University and RMA as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xingxing,,LIU
| | Sample_contact_laboratory | GiGuere
| | Sample_contact_department | Biochemistry, GCC
| | Sample_contact_institute | McGill University
| | Sample_contact_address | 1160 Pine Ave
| | Sample_contact_city | Montréal
| | Sample_contact_state | QC
| | Sample_contact_zip/postal_code | H3A 1A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM498nnn/GSM498093/suppl/GSM498093.CEL.gz
| | Sample_series_id | GSE19925
| | Sample_data_row_count | 45101
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