Search results for the GEO ID: GSE19997  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM499595 | GPL1261 |
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Pou4f1+/+ cells, transduced with control virus_Wt-MSCV_79
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Pou4f1+/+ cells, transduced with control virus
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genotype/variation: Pou4f1+/+
agent: control virus
tissue type: fetal liver
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WT-MSCV 73-010909-0900815
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| Sample_geo_accession | GSM499595
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499595/suppl/GSM499595.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
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GSM499596 | GPL1261 |
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Pou4f1+/+ cells, transduced with control virus_Wt-MSCV_81
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Pou4f1+/+ cells, transduced with control virus
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genotype/variation: Pou4f1+/+
agent: control virus
tissue type: fetal liver
|
WT-MSCV 74-010909-0900817
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| Sample_geo_accession | GSM499596
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499596/suppl/GSM499596.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
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GSM499597 | GPL1261 |
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Pou4f1+/+ cells, transduced with control virus_Wt-MSCV_85
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Pou4f1+/+ cells, transduced with control virus
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genotype/variation: Pou4f1+/+
agent: control virus
tissue type: fetal liver
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WT MSCV 112108-0900821
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| Sample_geo_accession | GSM499597
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499597/suppl/GSM499597.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
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GSM499598 | GPL1261 |
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Pou4f1-/- cells, transduced with control virus_KO_MSCV_83
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Pou4f1-/- cells, transduced with control virus
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genotype/variation: Pou4f1-/-
agent: control virus
tissue type: fetal liver
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KO MSCV 73-010909-0900819
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| Sample_geo_accession | GSM499598
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499598/suppl/GSM499598.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
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GSM499599 | GPL1261 |
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Pou4f1-/- cells, transduced with control virus_KO_MSCV_84
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Pou4f1-/- cells, transduced with control virus
|
genotype/variation: Pou4f1-/-
agent: control virus
tissue type: fetal liver
|
KO MSCV 74-010909-0900820
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| Sample_geo_accession | GSM499599
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499599/suppl/GSM499599.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
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GSM499600 | GPL1261 |
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Pou4f1-/- cells, transduced with control virus_KO_MSCV_86
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Pou4f1-/- cells, transduced with control virus
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genotype/variation: Pou4f1-/-
agent: control virus
tissue type: fetal liver
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KO MSCV 112108-0900822
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| Sample_geo_accession | GSM499600
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499600/suppl/GSM499600.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
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GSM499601 | GPL1261 |
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Pou4f1+/+ cells, transduced with MSCV-Pou4f1 virus_WT-POU_80
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Pou4f1+/+ cells, transduced with MSCV-Pou4f1 virus
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genotype/variation: Pou4f1+/+
agent: MSCV-Pou4f1 virus
tissue type: fetal liver
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WT-POU 73-010909-0900816
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| Sample_geo_accession | GSM499601
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499601/suppl/GSM499601.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
|
GSM499602 | GPL1261 |
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Pou4f1+/+ cells, transduced with MSCV-Pou4f1 virus_WT-POU_82
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Pou4f1+/+ cells, transduced with MSCV-Pou4f1 virus
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genotype/variation: Pou4f1+/+
agent: MSCV-Pou4f1 virus
tissue type: fetal liver
|
WT-POU 74-010909-0900818
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| Sample_geo_accession | GSM499602
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499602/suppl/GSM499602.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
| | |
|
GSM499603 | GPL1261 |
|
Pou4f1+/+ cells, transduced with MSCV-Pou4f1 virus_WT-POU_87
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Pou4f1+/+ cells, transduced with MSCV-Pou4f1 virus
|
genotype/variation: Pou4f1+/+
agent: MSCV-Pou4f1 virus
tissue type: fetal liver
|
WT POU 112108-0900823
|
| Sample_geo_accession | GSM499603
| | Sample_status | Public on Apr 09 2010
| | Sample_submission_date | Jan 22 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were transduced two consecutive days with MSCV-based retroviruses and sorted on GFP 48 hours later.
| | Sample_growth_protocol_ch1 | Fetal liver cells were removed, subjected to red cell lysis, and grown for 48h in RPMI 20% FBS, 1% L-Glutamine supplemented with 10 ng/mL interleukin-6, 100 ng/mL SCF, 6 ng/mL IL3, 50 ng/mL FLT3 ligand and 10 ng/mL TPO
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol LS (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was linear amplified
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | Raw probe intensities were background-corrected, quantile-normalized, and summarized using the R function rma.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Cahan
| | Sample_contact_email | patrick.cahan@childrens.harvard.edu
| | Sample_contact_laboratory | George Daley
| | Sample_contact_department | Heme/Onc
| | Sample_contact_institute | Children's Hospital, Boston
| | Sample_contact_address | One Blackfan Circle, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM499nnn/GSM499603/suppl/GSM499603.CEL.gz
| | Sample_series_id | GSE19997
| | Sample_data_row_count | 45101
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