Search results for the GEO ID: GSE20060  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM517443 | GPL3921 |
|
HumanAorticEndothelialCells_Individual2_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 2
batch: 1
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517443
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517443/suppl/GSM517443.cel.gz
| | Sample_relation | Reanalyzed by: GSM753033
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517444 | GPL3921 |
|
HumanAorticEndothelialCells_Individual2_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 2
batch: 1
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517444
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517444/suppl/GSM517444.cel.gz
| | Sample_relation | Reanalyzed by: GSM753034
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517445 | GPL3921 |
|
HumanAorticEndothelialCells_Individual2_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 2
batch: 1
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517445
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517445/suppl/GSM517445.cel.gz
| | Sample_relation | Reanalyzed by: GSM753036
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517446 | GPL3921 |
|
HumanAorticEndothelialCells_Individual2_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 2
batch: 1
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517446
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517446/suppl/GSM517446.cel.gz
| | Sample_relation | Reanalyzed by: GSM753038
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517447 | GPL3921 |
|
HumanAorticEndothelialCells_Individual4_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 4
batch: 1
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517447
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517447/suppl/GSM517447.cel.gz
| | Sample_relation | Reanalyzed by: GSM753040
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517448 | GPL3921 |
|
HumanAorticEndothelialCells_Individual4_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 4
batch: 1
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517448
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517448/suppl/GSM517448.cel.gz
| | Sample_relation | Reanalyzed by: GSM753041
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517449 | GPL3921 |
|
HumanAorticEndothelialCells_Individual4_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 4
batch: 1
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517449
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517449/suppl/GSM517449.cel.gz
| | Sample_relation | Reanalyzed by: GSM753043
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517450 | GPL3921 |
|
HumanAorticEndothelialCells_Individual4_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 4
batch: 1
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517450
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517450/suppl/GSM517450.cel.gz
| | Sample_relation | Reanalyzed by: GSM753045
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517451 | GPL3921 |
|
HumanAorticEndothelialCells_Individual5_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 5
batch: 1
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517451
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517451/suppl/GSM517451.cel.gz
| | Sample_relation | Reanalyzed by: GSM753046
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517452 | GPL3921 |
|
HumanAorticEndothelialCells_Individual5_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 5
batch: 1
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517452
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517452/suppl/GSM517452.cel.gz
| | Sample_relation | Reanalyzed by: GSM753048
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517453 | GPL3921 |
|
HumanAorticEndothelialCells_Individual5_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 5
batch: 1
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517453
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517453/suppl/GSM517453.cel.gz
| | Sample_relation | Reanalyzed by: GSM753050
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517454 | GPL3921 |
|
HumanAorticEndothelialCells_Individual5_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 5
batch: 1
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517454
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517454/suppl/GSM517454.cel.gz
| | Sample_relation | Reanalyzed by: GSM753051
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517455 | GPL3921 |
|
HumanAorticEndothelialCells_Individual6_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 6
batch: 1
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517455
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517455/suppl/GSM517455.cel.gz
| | Sample_relation | Reanalyzed by: GSM753052
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517456 | GPL3921 |
|
HumanAorticEndothelialCells_Individual6_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 6
batch: 1
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517456
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517456/suppl/GSM517456.cel.gz
| | Sample_relation | Reanalyzed by: GSM753053
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517457 | GPL3921 |
|
HumanAorticEndothelialCells_Individual6_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 6
batch: 1
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517457
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517457/suppl/GSM517457.cel.gz
| | Sample_relation | Reanalyzed by: GSM753054
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517458 | GPL3921 |
|
HumanAorticEndothelialCells_Individual6_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 6
batch: 1
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517458
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517458/suppl/GSM517458.cel.gz
| | Sample_relation | Reanalyzed by: GSM753055
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517459 | GPL3921 |
|
HumanAorticEndothelialCells_Individual7_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 7
batch: 1
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517459
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517459/suppl/GSM517459.cel.gz
| | Sample_relation | Reanalyzed by: GSM753056
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517460 | GPL3921 |
|
HumanAorticEndothelialCells_Individual7_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 7
batch: 1
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517460
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517460/suppl/GSM517460.cel.gz
| | Sample_relation | Reanalyzed by: GSM753057
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517461 | GPL3921 |
|
HumanAorticEndothelialCells_Individual7_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 7
batch: 1
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517461
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517461/suppl/GSM517461.cel.gz
| | Sample_relation | Reanalyzed by: GSM753058
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517462 | GPL3921 |
|
HumanAorticEndothelialCells_Individual7_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 7
batch: 1
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517462
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517462/suppl/GSM517462.cel.gz
| | Sample_relation | Reanalyzed by: GSM753059
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517463 | GPL3921 |
|
HumanAorticEndothelialCells_Individual9_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 9
batch: 1
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517463
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517463/suppl/GSM517463.cel.gz
| | Sample_relation | Reanalyzed by: GSM753060
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517464 | GPL3921 |
|
HumanAorticEndothelialCells_Individual9_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 9
batch: 1
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517464
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517464/suppl/GSM517464.cel.gz
| | Sample_relation | Reanalyzed by: GSM753061
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517465 | GPL3921 |
|
HumanAorticEndothelialCells_Individual9_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 9
batch: 1
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517465
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517465/suppl/GSM517465.cel.gz
| | Sample_relation | Reanalyzed by: GSM753062
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517466 | GPL3921 |
|
HumanAorticEndothelialCells_Individual9_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 9
batch: 1
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517466
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517466/suppl/GSM517466.cel.gz
| | Sample_relation | Reanalyzed by: GSM753063
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517467 | GPL3921 |
|
HumanAorticEndothelialCells_Individual10_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 10
batch: 1
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517467
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517467/suppl/GSM517467.cel.gz
| | Sample_relation | Reanalyzed by: GSM753064
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517468 | GPL3921 |
|
HumanAorticEndothelialCells_Individual10_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 10
batch: 1
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517468
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517468/suppl/GSM517468.cel.gz
| | Sample_relation | Reanalyzed by: GSM753065
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517469 | GPL3921 |
|
HumanAorticEndothelialCells_Individual10_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 10
batch: 1
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517469
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517469/suppl/GSM517469.cel.gz
| | Sample_relation | Reanalyzed by: GSM753066
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517470 | GPL3921 |
|
HumanAorticEndothelialCells_Individual10_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 10
batch: 1
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517470
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517470/suppl/GSM517470.cel.gz
| | Sample_relation | Reanalyzed by: GSM753067
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517471 | GPL3921 |
|
HumanAorticEndothelialCells_Individual12_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 12
batch: 1
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517471
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517471/suppl/GSM517471.cel.gz
| | Sample_relation | Reanalyzed by: GSM753068
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517472 | GPL3921 |
|
HumanAorticEndothelialCells_Individual12_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 12
batch: 1
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517472
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517472/suppl/GSM517472.cel.gz
| | Sample_relation | Reanalyzed by: GSM753069
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517473 | GPL3921 |
|
HumanAorticEndothelialCells_Individual12_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 12
batch: 1
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517473
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517473/suppl/GSM517473.cel.gz
| | Sample_relation | Reanalyzed by: GSM753070
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517474 | GPL3921 |
|
HumanAorticEndothelialCells_Individual12_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 12
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517474
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517474/suppl/GSM517474.cel.gz
| | Sample_relation | Reanalyzed by: GSM753071
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517475 | GPL3921 |
|
HumanAorticEndothelialCells_Individual13_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 13
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517475
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517475/suppl/GSM517475.cel.gz
| | Sample_relation | Reanalyzed by: GSM753072
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517476 | GPL3921 |
|
HumanAorticEndothelialCells_Individual13_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 13
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517476
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517476/suppl/GSM517476.cel.gz
| | Sample_relation | Reanalyzed by: GSM753073
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517477 | GPL3921 |
|
HumanAorticEndothelialCells_Individual13_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 13
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517477
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517477/suppl/GSM517477.cel.gz
| | Sample_relation | Reanalyzed by: GSM753074
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517478 | GPL3921 |
|
HumanAorticEndothelialCells_Individual14_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 14
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517478
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517478/suppl/GSM517478.cel.gz
| | Sample_relation | Reanalyzed by: GSM753075
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517479 | GPL3921 |
|
HumanAorticEndothelialCells_Individual14_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 14
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517479
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517479/suppl/GSM517479.cel.gz
| | Sample_relation | Reanalyzed by: GSM753076
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517480 | GPL3921 |
|
HumanAorticEndothelialCells_Individual14_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 14
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517480
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517480/suppl/GSM517480.cel.gz
| | Sample_relation | Reanalyzed by: GSM753077
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517481 | GPL3921 |
|
HumanAorticEndothelialCells_Individual14_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 14
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517481
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517481/suppl/GSM517481.cel.gz
| | Sample_relation | Reanalyzed by: GSM753078
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517482 | GPL3921 |
|
HumanAorticEndothelialCells_Individual15_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 15
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517482
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517482/suppl/GSM517482.cel.gz
| | Sample_relation | Reanalyzed by: GSM753079
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517483 | GPL3921 |
|
HumanAorticEndothelialCells_Individual15_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 15
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517483
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517483/suppl/GSM517483.cel.gz
| | Sample_relation | Reanalyzed by: GSM753080
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517484 | GPL3921 |
|
HumanAorticEndothelialCells_Individual15_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 15
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517484
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517484/suppl/GSM517484.cel.gz
| | Sample_relation | Reanalyzed by: GSM753081
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517485 | GPL3921 |
|
HumanAorticEndothelialCells_Individual15_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 15
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517485
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517485/suppl/GSM517485.cel.gz
| | Sample_relation | Reanalyzed by: GSM753082
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517486 | GPL3921 |
|
HumanAorticEndothelialCells_Individual17_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 17
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517486
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517486/suppl/GSM517486.cel.gz
| | Sample_relation | Reanalyzed by: GSM753083
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517487 | GPL3921 |
|
HumanAorticEndothelialCells_Individual17_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 17
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517487
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517487/suppl/GSM517487.cel.gz
| | Sample_relation | Reanalyzed by: GSM753084
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517488 | GPL3921 |
|
HumanAorticEndothelialCells_Individual17_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 17
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517488
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517488/suppl/GSM517488.cel.gz
| | Sample_relation | Reanalyzed by: GSM753085
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517489 | GPL3921 |
|
HumanAorticEndothelialCells_Individual17_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 17
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517489
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517489/suppl/GSM517489.cel.gz
| | Sample_relation | Reanalyzed by: GSM753086
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517490 | GPL3921 |
|
HumanAorticEndothelialCells_Individual18_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 18
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517490
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517490/suppl/GSM517490.cel.gz
| | Sample_relation | Reanalyzed by: GSM753087
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517491 | GPL3921 |
|
HumanAorticEndothelialCells_Individual18_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 18
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517491
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517491/suppl/GSM517491.cel.gz
| | Sample_relation | Reanalyzed by: GSM753088
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517492 | GPL3921 |
|
HumanAorticEndothelialCells_Individual18_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 18
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517492
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517492/suppl/GSM517492.cel.gz
| | Sample_relation | Reanalyzed by: GSM753089
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517493 | GPL3921 |
|
HumanAorticEndothelialCells_Individual18_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 18
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517493
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517493/suppl/GSM517493.cel.gz
| | Sample_relation | Reanalyzed by: GSM753090
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517494 | GPL3921 |
|
HumanAorticEndothelialCells_Individual19_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 19
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517494
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517494/suppl/GSM517494.cel.gz
| | Sample_relation | Reanalyzed by: GSM753091
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517495 | GPL3921 |
|
HumanAorticEndothelialCells_Individual19_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 19
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517495
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517495/suppl/GSM517495.cel.gz
| | Sample_relation | Reanalyzed by: GSM753092
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517496 | GPL3921 |
|
HumanAorticEndothelialCells_Individual19_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 19
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517496
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517496/suppl/GSM517496.cel.gz
| | Sample_relation | Reanalyzed by: GSM753093
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517497 | GPL3921 |
|
HumanAorticEndothelialCells_Individual19_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 19
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517497
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517497/suppl/GSM517497.cel.gz
| | Sample_relation | Reanalyzed by: GSM753094
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517498 | GPL3921 |
|
HumanAorticEndothelialCells_Individual20_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 20
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517498
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517498/suppl/GSM517498.cel.gz
| | Sample_relation | Reanalyzed by: GSM753095
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517499 | GPL3921 |
|
HumanAorticEndothelialCells_Individual20_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 20
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517499
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517499/suppl/GSM517499.cel.gz
| | Sample_relation | Reanalyzed by: GSM753096
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517500 | GPL3921 |
|
HumanAorticEndothelialCells_Individual20_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 20
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517500
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517500/suppl/GSM517500.cel.gz
| | Sample_relation | Reanalyzed by: GSM753097
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517501 | GPL3921 |
|
HumanAorticEndothelialCells_Individual20_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 20
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517501
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517501/suppl/GSM517501.cel.gz
| | Sample_relation | Reanalyzed by: GSM753098
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517502 | GPL3921 |
|
HumanAorticEndothelialCells_Individual21_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 21
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517502
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517502/suppl/GSM517502.cel.gz
| | Sample_relation | Reanalyzed by: GSM753099
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517503 | GPL3921 |
|
HumanAorticEndothelialCells_Individual21_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 21
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517503
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517503/suppl/GSM517503.cel.gz
| | Sample_relation | Reanalyzed by: GSM753100
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517504 | GPL3921 |
|
HumanAorticEndothelialCells_Individual21_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 21
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517504
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517504/suppl/GSM517504.cel.gz
| | Sample_relation | Reanalyzed by: GSM753101
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517505 | GPL3921 |
|
HumanAorticEndothelialCells_Individual21_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 21
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517505
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517505/suppl/GSM517505.cel.gz
| | Sample_relation | Reanalyzed by: GSM753102
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517506 | GPL3921 |
|
HumanAorticEndothelialCells_Individual22_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 22
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517506
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517506/suppl/GSM517506.cel.gz
| | Sample_relation | Reanalyzed by: GSM753103
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517507 | GPL3921 |
|
HumanAorticEndothelialCells_Individual22_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 22
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517507
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517507/suppl/GSM517507.cel.gz
| | Sample_relation | Reanalyzed by: GSM753104
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517508 | GPL3921 |
|
HumanAorticEndothelialCells_Individual24_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 24
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517508
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517508/suppl/GSM517508.cel.gz
| | Sample_relation | Reanalyzed by: GSM753105
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517509 | GPL3921 |
|
HumanAorticEndothelialCells_Individual24_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 24
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517509
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517509/suppl/GSM517509.cel.gz
| | Sample_relation | Reanalyzed by: GSM753106
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517510 | GPL3921 |
|
HumanAorticEndothelialCells_Individual24_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 24
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517510
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517510/suppl/GSM517510.cel.gz
| | Sample_relation | Reanalyzed by: GSM753107
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517511 | GPL3921 |
|
HumanAorticEndothelialCells_Individual24_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 24
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517511
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517511/suppl/GSM517511.cel.gz
| | Sample_relation | Reanalyzed by: GSM753108
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517512 | GPL3921 |
|
HumanAorticEndothelialCells_Individual25_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 25
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517512
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517512/suppl/GSM517512.cel.gz
| | Sample_relation | Reanalyzed by: GSM753109
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517513 | GPL3921 |
|
HumanAorticEndothelialCells_Individual25_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 25
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517513
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517513/suppl/GSM517513.cel.gz
| | Sample_relation | Reanalyzed by: GSM753110
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517514 | GPL3921 |
|
HumanAorticEndothelialCells_Individual25_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 25
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517514
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517514/suppl/GSM517514.cel.gz
| | Sample_relation | Reanalyzed by: GSM753111
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517515 | GPL3921 |
|
HumanAorticEndothelialCells_Individual25_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 25
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517515
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517515/suppl/GSM517515.cel.gz
| | Sample_relation | Reanalyzed by: GSM753112
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517516 | GPL3921 |
|
HumanAorticEndothelialCells_Individual26_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 26
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517516
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517516/suppl/GSM517516.cel.gz
| | Sample_relation | Reanalyzed by: GSM753113
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517517 | GPL3921 |
|
HumanAorticEndothelialCells_Individual26_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 26
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517517
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517517/suppl/GSM517517.cel.gz
| | Sample_relation | Reanalyzed by: GSM753114
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517518 | GPL3921 |
|
HumanAorticEndothelialCells_Individual26_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 26
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517518
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517518/suppl/GSM517518.cel.gz
| | Sample_relation | Reanalyzed by: GSM753115
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517519 | GPL3921 |
|
HumanAorticEndothelialCells_Individual27_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 27
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517519
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517519/suppl/GSM517519.cel.gz
| | Sample_relation | Reanalyzed by: GSM753116
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517520 | GPL3921 |
|
HumanAorticEndothelialCells_Individual27_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 27
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517520
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517520/suppl/GSM517520.cel.gz
| | Sample_relation | Reanalyzed by: GSM753117
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517521 | GPL3921 |
|
HumanAorticEndothelialCells_Individual27_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 27
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517521
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517521/suppl/GSM517521.cel.gz
| | Sample_relation | Reanalyzed by: GSM753118
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517522 | GPL3921 |
|
HumanAorticEndothelialCells_Individual27_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 27
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517522
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517522/suppl/GSM517522.cel.gz
| | Sample_relation | Reanalyzed by: GSM753119
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517523 | GPL3921 |
|
HumanAorticEndothelialCells_Individual28_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 28
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517523
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517523/suppl/GSM517523.cel.gz
| | Sample_relation | Reanalyzed by: GSM753120
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517524 | GPL3921 |
|
HumanAorticEndothelialCells_Individual28_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 28
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517524
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517524/suppl/GSM517524.cel.gz
| | Sample_relation | Reanalyzed by: GSM753121
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517525 | GPL3921 |
|
HumanAorticEndothelialCells_Individual28_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 28
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517525
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517525/suppl/GSM517525.cel.gz
| | Sample_relation | Reanalyzed by: GSM753122
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517526 | GPL3921 |
|
HumanAorticEndothelialCells_Individual28_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 28
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517526
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517526/suppl/GSM517526.cel.gz
| | Sample_relation | Reanalyzed by: GSM753123
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517527 | GPL3921 |
|
HumanAorticEndothelialCells_Individual29_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 29
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517527
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517527/suppl/GSM517527.cel.gz
| | Sample_relation | Reanalyzed by: GSM753124
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517528 | GPL3921 |
|
HumanAorticEndothelialCells_Individual29_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 29
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517528
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517528/suppl/GSM517528.cel.gz
| | Sample_relation | Reanalyzed by: GSM753125
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517529 | GPL3921 |
|
HumanAorticEndothelialCells_Individual29_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 29
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517529
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517529/suppl/GSM517529.cel.gz
| | Sample_relation | Reanalyzed by: GSM753126
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517530 | GPL3921 |
|
HumanAorticEndothelialCells_Individual29_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 29
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517530
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517530/suppl/GSM517530.cel.gz
| | Sample_relation | Reanalyzed by: GSM753127
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517531 | GPL3921 |
|
HumanAorticEndothelialCells_Individual30_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 30
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517531
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517531/suppl/GSM517531.cel.gz
| | Sample_relation | Reanalyzed by: GSM753128
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517532 | GPL3921 |
|
HumanAorticEndothelialCells_Individual30_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 30
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517532
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517532/suppl/GSM517532.cel.gz
| | Sample_relation | Reanalyzed by: GSM753129
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517533 | GPL3921 |
|
HumanAorticEndothelialCells_Individual30_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 30
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517533
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517533/suppl/GSM517533.cel.gz
| | Sample_relation | Reanalyzed by: GSM753130
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517534 | GPL3921 |
|
HumanAorticEndothelialCells_Individual30_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 30
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517534
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517534/suppl/GSM517534.cel.gz
| | Sample_relation | Reanalyzed by: GSM753131
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517535 | GPL3921 |
|
HumanAorticEndothelialCells_Individual31_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 31
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517535
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517535/suppl/GSM517535.cel.gz
| | Sample_relation | Reanalyzed by: GSM753132
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517536 | GPL3921 |
|
HumanAorticEndothelialCells_Individual31_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 31
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517536
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517536/suppl/GSM517536.cel.gz
| | Sample_relation | Reanalyzed by: GSM753133
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517537 | GPL3921 |
|
HumanAorticEndothelialCells_Individual31_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 31
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517537
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517537/suppl/GSM517537.cel.gz
| | Sample_relation | Reanalyzed by: GSM753134
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517538 | GPL3921 |
|
HumanAorticEndothelialCells_Individual31_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 31
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517538
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517538/suppl/GSM517538.cel.gz
| | Sample_relation | Reanalyzed by: GSM753135
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517539 | GPL3921 |
|
HumanAorticEndothelialCells_Individual32_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 32
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517539
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517539/suppl/GSM517539.cel.gz
| | Sample_relation | Reanalyzed by: GSM753136
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517540 | GPL3921 |
|
HumanAorticEndothelialCells_Individual32_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 32
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517540
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517540/suppl/GSM517540.cel.gz
| | Sample_relation | Reanalyzed by: GSM753137
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517541 | GPL3921 |
|
HumanAorticEndothelialCells_Individual32_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 32
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517541
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517541/suppl/GSM517541.cel.gz
| | Sample_relation | Reanalyzed by: GSM753138
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517542 | GPL3921 |
|
HumanAorticEndothelialCells_Individual33_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 33
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517542
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517542/suppl/GSM517542.cel.gz
| | Sample_relation | Reanalyzed by: GSM753139
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517543 | GPL3921 |
|
HumanAorticEndothelialCells_Individual33_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 33
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517543
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517543/suppl/GSM517543.cel.gz
| | Sample_relation | Reanalyzed by: GSM753140
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517544 | GPL3921 |
|
HumanAorticEndothelialCells_Individual33_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 33
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517544
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517544/suppl/GSM517544.cel.gz
| | Sample_relation | Reanalyzed by: GSM753141
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517545 | GPL3921 |
|
HumanAorticEndothelialCells_Individual33_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 33
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517545
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517545/suppl/GSM517545.cel.gz
| | Sample_relation | Reanalyzed by: GSM753142
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517546 | GPL3921 |
|
HumanAorticEndothelialCells_Individual34_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 34
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517546
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517546/suppl/GSM517546.cel.gz
| | Sample_relation | Reanalyzed by: GSM753143
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517547 | GPL3921 |
|
HumanAorticEndothelialCells_Individual34_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 34
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517547
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517547/suppl/GSM517547.cel.gz
| | Sample_relation | Reanalyzed by: GSM753144
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517548 | GPL3921 |
|
HumanAorticEndothelialCells_Individual34_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 34
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517548
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517548/suppl/GSM517548.cel.gz
| | Sample_relation | Reanalyzed by: GSM753145
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517549 | GPL3921 |
|
HumanAorticEndothelialCells_Individual34_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 34
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517549
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517549/suppl/GSM517549.cel.gz
| | Sample_relation | Reanalyzed by: GSM753146
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517550 | GPL3921 |
|
HumanAorticEndothelialCells_Individual35_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 35
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517550
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517550/suppl/GSM517550.cel.gz
| | Sample_relation | Reanalyzed by: GSM753147
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517551 | GPL3921 |
|
HumanAorticEndothelialCells_Individual35_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 35
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517551
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517551/suppl/GSM517551.cel.gz
| | Sample_relation | Reanalyzed by: GSM753148
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517552 | GPL3921 |
|
HumanAorticEndothelialCells_Individual35_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 35
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517552
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517552/suppl/GSM517552.cel.gz
| | Sample_relation | Reanalyzed by: GSM753149
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517554 | GPL3921 |
|
HumanAorticEndothelialCells_Individual37_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 37
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517554
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517554/suppl/GSM517554.cel.gz
| | Sample_relation | Reanalyzed by: GSM753151
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517555 | GPL3921 |
|
HumanAorticEndothelialCells_Individual37_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 37
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517555
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517555/suppl/GSM517555.cel.gz
| | Sample_relation | Reanalyzed by: GSM753152
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517556 | GPL3921 |
|
HumanAorticEndothelialCells_Individual37_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 37
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517556
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517556/suppl/GSM517556.cel.gz
| | Sample_relation | Reanalyzed by: GSM753153
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517557 | GPL3921 |
|
HumanAorticEndothelialCells_Individual37_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 37
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517557
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517557/suppl/GSM517557.cel.gz
| | Sample_relation | Reanalyzed by: GSM753154
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517558 | GPL3921 |
|
HumanAorticEndothelialCells_Individual38_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 38
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517558
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517558/suppl/GSM517558.cel.gz
| | Sample_relation | Reanalyzed by: GSM753155
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517559 | GPL3921 |
|
HumanAorticEndothelialCells_Individual38_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 38
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517559
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517559/suppl/GSM517559.cel.gz
| | Sample_relation | Reanalyzed by: GSM753156
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517560 | GPL3921 |
|
HumanAorticEndothelialCells_Individual38_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 38
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517560
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517560/suppl/GSM517560.cel.gz
| | Sample_relation | Reanalyzed by: GSM753157
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517561 | GPL3921 |
|
HumanAorticEndothelialCells_Individual38_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 38
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517561
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517561/suppl/GSM517561.cel.gz
| | Sample_relation | Reanalyzed by: GSM753158
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517562 | GPL3921 |
|
HumanAorticEndothelialCells_Individual39_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 39
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517562
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517562/suppl/GSM517562.cel.gz
| | Sample_relation | Reanalyzed by: GSM753159
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517563 | GPL3921 |
|
HumanAorticEndothelialCells_Individual39_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 39
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517563
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517563/suppl/GSM517563.cel.gz
| | Sample_relation | Reanalyzed by: GSM753160
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517564 | GPL3921 |
|
HumanAorticEndothelialCells_Individual39_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 39
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517564
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517564/suppl/GSM517564.cel.gz
| | Sample_relation | Reanalyzed by: GSM753161
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517565 | GPL3921 |
|
HumanAorticEndothelialCells_Individual39_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 39
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517565
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517565/suppl/GSM517565.cel.gz
| | Sample_relation | Reanalyzed by: GSM753162
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517566 | GPL3921 |
|
HumanAorticEndothelialCells_Individual41_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 41
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517566
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517566/suppl/GSM517566.cel.gz
| | Sample_relation | Reanalyzed by: GSM753163
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517567 | GPL3921 |
|
HumanAorticEndothelialCells_Individual41_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 41
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517567
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517567/suppl/GSM517567.cel.gz
| | Sample_relation | Reanalyzed by: GSM753164
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517568 | GPL3921 |
|
HumanAorticEndothelialCells_Individual41_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 41
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517568
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517568/suppl/GSM517568.cel.gz
| | Sample_relation | Reanalyzed by: GSM753165
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517569 | GPL3921 |
|
HumanAorticEndothelialCells_Individual41_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 41
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517569
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517569/suppl/GSM517569.cel.gz
| | Sample_relation | Reanalyzed by: GSM753166
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517570 | GPL3921 |
|
HumanAorticEndothelialCells_Individual42_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 42
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517570
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517570/suppl/GSM517570.cel.gz
| | Sample_relation | Reanalyzed by: GSM753167
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517571 | GPL3921 |
|
HumanAorticEndothelialCells_Individual42_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 42
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517571
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517571/suppl/GSM517571.cel.gz
| | Sample_relation | Reanalyzed by: GSM753168
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517572 | GPL3921 |
|
HumanAorticEndothelialCells_Individual42_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 42
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517572
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517572/suppl/GSM517572.cel.gz
| | Sample_relation | Reanalyzed by: GSM753169
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517573 | GPL3921 |
|
HumanAorticEndothelialCells_Individual43_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 43
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517573
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517573/suppl/GSM517573.cel.gz
| | Sample_relation | Reanalyzed by: GSM753170
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517574 | GPL3921 |
|
HumanAorticEndothelialCells_Individual43_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 43
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517574
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517574/suppl/GSM517574.cel.gz
| | Sample_relation | Reanalyzed by: GSM753171
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517575 | GPL3921 |
|
HumanAorticEndothelialCells_Individual43_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 43
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517575
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517575/suppl/GSM517575.cel.gz
| | Sample_relation | Reanalyzed by: GSM753172
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517576 | GPL3921 |
|
HumanAorticEndothelialCells_Individual43_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 43
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517576
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517576/suppl/GSM517576.cel.gz
| | Sample_relation | Reanalyzed by: GSM753173
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517577 | GPL3921 |
|
HumanAorticEndothelialCells_Individual44_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 44
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517577
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517577/suppl/GSM517577.cel.gz
| | Sample_relation | Reanalyzed by: GSM753174
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517578 | GPL3921 |
|
HumanAorticEndothelialCells_Individual44_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 44
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517578
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517578/suppl/GSM517578.cel.gz
| | Sample_relation | Reanalyzed by: GSM753175
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517579 | GPL3921 |
|
HumanAorticEndothelialCells_Individual44_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 44
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517579
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517579/suppl/GSM517579.cel.gz
| | Sample_relation | Reanalyzed by: GSM753176
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517580 | GPL3921 |
|
HumanAorticEndothelialCells_Individual44_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 44
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517580
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517580/suppl/GSM517580.cel.gz
| | Sample_relation | Reanalyzed by: GSM753177
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517581 | GPL3921 |
|
HumanAorticEndothelialCells_Individual45_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 45
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517581
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517581/suppl/GSM517581.cel.gz
| | Sample_relation | Reanalyzed by: GSM753178
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517582 | GPL3921 |
|
HumanAorticEndothelialCells_Individual45_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 45
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517582
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517582/suppl/GSM517582.cel.gz
| | Sample_relation | Reanalyzed by: GSM753179
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517583 | GPL3921 |
|
HumanAorticEndothelialCells_Individual45_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 45
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517583
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517583/suppl/GSM517583.cel.gz
| | Sample_relation | Reanalyzed by: GSM753180
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517584 | GPL3921 |
|
HumanAorticEndothelialCells_Individual45_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 45
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517584
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517584/suppl/GSM517584.cel.gz
| | Sample_relation | Reanalyzed by: GSM753181
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517585 | GPL3921 |
|
HumanAorticEndothelialCells_Individual46_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 46
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517585
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517585/suppl/GSM517585.cel.gz
| | Sample_relation | Reanalyzed by: GSM753182
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517586 | GPL3921 |
|
HumanAorticEndothelialCells_Individual46_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 46
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517586
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517586/suppl/GSM517586.cel.gz
| | Sample_relation | Reanalyzed by: GSM753183
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517587 | GPL3921 |
|
HumanAorticEndothelialCells_Individual46_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 46
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517587
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517587/suppl/GSM517587.cel.gz
| | Sample_relation | Reanalyzed by: GSM753184
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517588 | GPL3921 |
|
HumanAorticEndothelialCells_Individual46_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 46
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517588
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517588/suppl/GSM517588.cel.gz
| | Sample_relation | Reanalyzed by: GSM753185
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517589 | GPL3921 |
|
HumanAorticEndothelialCells_Individual47_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 47
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517589
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517589/suppl/GSM517589.cel.gz
| | Sample_relation | Reanalyzed by: GSM753186
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517590 | GPL3921 |
|
HumanAorticEndothelialCells_Individual47_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 47
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517590
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517590/suppl/GSM517590.cel.gz
| | Sample_relation | Reanalyzed by: GSM753187
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517591 | GPL3921 |
|
HumanAorticEndothelialCells_Individual47_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 47
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517591
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517591/suppl/GSM517591.cel.gz
| | Sample_relation | Reanalyzed by: GSM753188
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517592 | GPL3921 |
|
HumanAorticEndothelialCells_Individual47_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 47
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517592
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517592/suppl/GSM517592.cel.gz
| | Sample_relation | Reanalyzed by: GSM753189
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517593 | GPL3921 |
|
HumanAorticEndothelialCells_Individual48_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 48
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517593
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517593/suppl/GSM517593.cel.gz
| | Sample_relation | Reanalyzed by: GSM753190
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517594 | GPL3921 |
|
HumanAorticEndothelialCells_Individual48_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 48
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517594
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517594/suppl/GSM517594.cel.gz
| | Sample_relation | Reanalyzed by: GSM753191
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517595 | GPL3921 |
|
HumanAorticEndothelialCells_Individual48_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 48
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517595
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517595/suppl/GSM517595.cel.gz
| | Sample_relation | Reanalyzed by: GSM753192
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517596 | GPL3921 |
|
HumanAorticEndothelialCells_Individual48_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 48
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517596
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517596/suppl/GSM517596.cel.gz
| | Sample_relation | Reanalyzed by: GSM753193
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517597 | GPL3921 |
|
HumanAorticEndothelialCells_Individual49_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 49
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517597
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517597/suppl/GSM517597.cel.gz
| | Sample_relation | Reanalyzed by: GSM753194
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517598 | GPL3921 |
|
HumanAorticEndothelialCells_Individual49_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 49
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517598
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517598/suppl/GSM517598.cel.gz
| | Sample_relation | Reanalyzed by: GSM753195
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517599 | GPL3921 |
|
HumanAorticEndothelialCells_Individual49_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 49
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517599
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517599/suppl/GSM517599.cel.gz
| | Sample_relation | Reanalyzed by: GSM753196
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517600 | GPL3921 |
|
HumanAorticEndothelialCells_Individual49_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 49
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517600
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517600/suppl/GSM517600.cel.gz
| | Sample_relation | Reanalyzed by: GSM753197
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517601 | GPL3921 |
|
HumanAorticEndothelialCells_Individual50_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 50
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517601
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517601/suppl/GSM517601.cel.gz
| | Sample_relation | Reanalyzed by: GSM753198
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517602 | GPL3921 |
|
HumanAorticEndothelialCells_Individual50_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 50
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517602
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517602/suppl/GSM517602.cel.gz
| | Sample_relation | Reanalyzed by: GSM753199
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517603 | GPL3921 |
|
HumanAorticEndothelialCells_Individual50_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 50
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517603
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517603/suppl/GSM517603.cel.gz
| | Sample_relation | Reanalyzed by: GSM753200
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517604 | GPL3921 |
|
HumanAorticEndothelialCells_Individual50_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 50
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517604
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517604/suppl/GSM517604.cel.gz
| | Sample_relation | Reanalyzed by: GSM753201
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517605 | GPL3921 |
|
HumanAorticEndothelialCells_Individual51_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 51
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517605
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517605/suppl/GSM517605.cel.gz
| | Sample_relation | Reanalyzed by: GSM753202
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517606 | GPL3921 |
|
HumanAorticEndothelialCells_Individual51_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 51
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517606
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517606/suppl/GSM517606.cel.gz
| | Sample_relation | Reanalyzed by: GSM753203
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517607 | GPL3921 |
|
HumanAorticEndothelialCells_Individual51_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 51
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517607
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517607/suppl/GSM517607.cel.gz
| | Sample_relation | Reanalyzed by: GSM753204
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517608 | GPL3921 |
|
HumanAorticEndothelialCells_Individual51_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 51
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517608
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517608/suppl/GSM517608.cel.gz
| | Sample_relation | Reanalyzed by: GSM753205
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517609 | GPL3921 |
|
HumanAorticEndothelialCells_Individual52_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 52
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517609
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517609/suppl/GSM517609.cel.gz
| | Sample_relation | Reanalyzed by: GSM753206
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517610 | GPL3921 |
|
HumanAorticEndothelialCells_Individual52_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 52
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517610
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517610/suppl/GSM517610.cel.gz
| | Sample_relation | Reanalyzed by: GSM753207
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517611 | GPL3921 |
|
HumanAorticEndothelialCells_Individual52_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 52
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517611
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517611/suppl/GSM517611.cel.gz
| | Sample_relation | Reanalyzed by: GSM753208
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517612 | GPL3921 |
|
HumanAorticEndothelialCells_Individual52_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 52
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517612
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517612/suppl/GSM517612.cel.gz
| | Sample_relation | Reanalyzed by: GSM753209
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517613 | GPL3921 |
|
HumanAorticEndothelialCells_Individual53_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 53
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517613
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517613/suppl/GSM517613.cel.gz
| | Sample_relation | Reanalyzed by: GSM753210
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517614 | GPL3921 |
|
HumanAorticEndothelialCells_Individual53_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 53
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517614
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517614/suppl/GSM517614.cel.gz
| | Sample_relation | Reanalyzed by: GSM753211
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517615 | GPL3921 |
|
HumanAorticEndothelialCells_Individual53_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 53
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517615
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517615/suppl/GSM517615.cel.gz
| | Sample_relation | Reanalyzed by: GSM753212
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517616 | GPL3921 |
|
HumanAorticEndothelialCells_Individual53_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 53
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517616
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517616/suppl/GSM517616.cel.gz
| | Sample_relation | Reanalyzed by: GSM753213
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517617 | GPL3921 |
|
HumanAorticEndothelialCells_Individual54_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 54
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517617
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517617/suppl/GSM517617.cel.gz
| | Sample_relation | Reanalyzed by: GSM753214
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517618 | GPL3921 |
|
HumanAorticEndothelialCells_Individual54_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 54
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517618
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517618/suppl/GSM517618.cel.gz
| | Sample_relation | Reanalyzed by: GSM753215
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517619 | GPL3921 |
|
HumanAorticEndothelialCells_Individual54_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 54
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517619
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517619/suppl/GSM517619.cel.gz
| | Sample_relation | Reanalyzed by: GSM753216
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517620 | GPL3921 |
|
HumanAorticEndothelialCells_Individual54_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 54
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517620
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517620/suppl/GSM517620.cel.gz
| | Sample_relation | Reanalyzed by: GSM753217
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517621 | GPL3921 |
|
HumanAorticEndothelialCells_Individual55_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 55
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517621
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517621/suppl/GSM517621.cel.gz
| | Sample_relation | Reanalyzed by: GSM753218
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517622 | GPL3921 |
|
HumanAorticEndothelialCells_Individual55_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 55
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517622
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517622/suppl/GSM517622.cel.gz
| | Sample_relation | Reanalyzed by: GSM753219
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517623 | GPL3921 |
|
HumanAorticEndothelialCells_Individual55_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 55
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517623
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517623/suppl/GSM517623.cel.gz
| | Sample_relation | Reanalyzed by: GSM753220
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517624 | GPL3921 |
|
HumanAorticEndothelialCells_Individual55_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 55
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517624
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517624/suppl/GSM517624.cel.gz
| | Sample_relation | Reanalyzed by: GSM753221
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517625 | GPL3921 |
|
HumanAorticEndothelialCells_Individual56_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 56
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517625
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517625/suppl/GSM517625.cel.gz
| | Sample_relation | Reanalyzed by: GSM753222
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517626 | GPL3921 |
|
HumanAorticEndothelialCells_Individual56_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 56
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517626
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517626/suppl/GSM517626.cel.gz
| | Sample_relation | Reanalyzed by: GSM753223
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517627 | GPL3921 |
|
HumanAorticEndothelialCells_Individual56_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 56
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517627
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517627/suppl/GSM517627.cel.gz
| | Sample_relation | Reanalyzed by: GSM753224
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517628 | GPL3921 |
|
HumanAorticEndothelialCells_Individual56_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 56
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517628
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517628/suppl/GSM517628.cel.gz
| | Sample_relation | Reanalyzed by: GSM753225
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517629 | GPL3921 |
|
HumanAorticEndothelialCells_Individual57_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 57
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517629
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517629/suppl/GSM517629.cel.gz
| | Sample_relation | Reanalyzed by: GSM753226
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517630 | GPL3921 |
|
HumanAorticEndothelialCells_Individual57_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 57
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517630
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517630/suppl/GSM517630.cel.gz
| | Sample_relation | Reanalyzed by: GSM753227
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517631 | GPL3921 |
|
HumanAorticEndothelialCells_Individual57_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 57
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517631
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517631/suppl/GSM517631.cel.gz
| | Sample_relation | Reanalyzed by: GSM753228
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517632 | GPL3921 |
|
HumanAorticEndothelialCells_Individual57_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 57
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517632
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517632/suppl/GSM517632.cel.gz
| | Sample_relation | Reanalyzed by: GSM753229
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517633 | GPL3921 |
|
HumanAorticEndothelialCells_Individual60_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 60
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517633
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517633/suppl/GSM517633.cel.gz
| | Sample_relation | Reanalyzed by: GSM753230
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517634 | GPL3921 |
|
HumanAorticEndothelialCells_Individual60_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 60
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517634
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517634/suppl/GSM517634.cel.gz
| | Sample_relation | Reanalyzed by: GSM753231
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517635 | GPL3921 |
|
HumanAorticEndothelialCells_Individual60_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 60
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517635
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517635/suppl/GSM517635.cel.gz
| | Sample_relation | Reanalyzed by: GSM753232
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517636 | GPL3921 |
|
HumanAorticEndothelialCells_Individual60_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 60
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517636
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517636/suppl/GSM517636.cel.gz
| | Sample_relation | Reanalyzed by: GSM753233
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517637 | GPL3921 |
|
HumanAorticEndothelialCells_Individual61_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 61
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517637
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517637/suppl/GSM517637.cel.gz
| | Sample_relation | Reanalyzed by: GSM753234
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517638 | GPL3921 |
|
HumanAorticEndothelialCells_Individual61_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 61
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517638
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517638/suppl/GSM517638.cel.gz
| | Sample_relation | Reanalyzed by: GSM753235
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517639 | GPL3921 |
|
HumanAorticEndothelialCells_Individual61_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 61
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517639
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517639/suppl/GSM517639.cel.gz
| | Sample_relation | Reanalyzed by: GSM753236
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517640 | GPL3921 |
|
HumanAorticEndothelialCells_Individual61_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 61
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517640
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517640/suppl/GSM517640.cel.gz
| | Sample_relation | Reanalyzed by: GSM753237
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517641 | GPL3921 |
|
HumanAorticEndothelialCells_Individual62_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 62
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517641
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517641/suppl/GSM517641.cel.gz
| | Sample_relation | Reanalyzed by: GSM753238
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517642 | GPL3921 |
|
HumanAorticEndothelialCells_Individual62_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 62
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517642
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517642/suppl/GSM517642.cel.gz
| | Sample_relation | Reanalyzed by: GSM753239
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517643 | GPL3921 |
|
HumanAorticEndothelialCells_Individual62_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 62
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517643
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517643/suppl/GSM517643.cel.gz
| | Sample_relation | Reanalyzed by: GSM753240
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517644 | GPL3921 |
|
HumanAorticEndothelialCells_Individual62_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 62
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517644
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517644/suppl/GSM517644.cel.gz
| | Sample_relation | Reanalyzed by: GSM753241
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517645 | GPL3921 |
|
HumanAorticEndothelialCells_Individual63_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 63
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517645
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517645/suppl/GSM517645.cel.gz
| | Sample_relation | Reanalyzed by: GSM753242
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517646 | GPL3921 |
|
HumanAorticEndothelialCells_Individual63_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 63
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517646
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517646/suppl/GSM517646.cel.gz
| | Sample_relation | Reanalyzed by: GSM753243
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517647 | GPL3921 |
|
HumanAorticEndothelialCells_Individual63_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 63
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517647
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517647/suppl/GSM517647.cel.gz
| | Sample_relation | Reanalyzed by: GSM753244
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517648 | GPL3921 |
|
HumanAorticEndothelialCells_Individual63_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 63
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517648
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517648/suppl/GSM517648.cel.gz
| | Sample_relation | Reanalyzed by: GSM753245
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517649 | GPL3921 |
|
HumanAorticEndothelialCells_Individual64_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 64
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517649
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517649/suppl/GSM517649.cel.gz
| | Sample_relation | Reanalyzed by: GSM753246
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517650 | GPL3921 |
|
HumanAorticEndothelialCells_Individual64_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 64
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517650
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517650/suppl/GSM517650.cel.gz
| | Sample_relation | Reanalyzed by: GSM753247
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517651 | GPL3921 |
|
HumanAorticEndothelialCells_Individual64_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 64
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517651
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517651/suppl/GSM517651.cel.gz
| | Sample_relation | Reanalyzed by: GSM753248
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517652 | GPL3921 |
|
HumanAorticEndothelialCells_Individual64_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 64
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517652
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517652/suppl/GSM517652.cel.gz
| | Sample_relation | Reanalyzed by: GSM753249
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517653 | GPL3921 |
|
HumanAorticEndothelialCells_Individual65_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 65
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517653
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517653/suppl/GSM517653.cel.gz
| | Sample_relation | Reanalyzed by: GSM753250
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517654 | GPL3921 |
|
HumanAorticEndothelialCells_Individual65_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 65
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517654
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517654/suppl/GSM517654.cel.gz
| | Sample_relation | Reanalyzed by: GSM753251
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517655 | GPL3921 |
|
HumanAorticEndothelialCells_Individual65_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 65
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517655
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517655/suppl/GSM517655.cel.gz
| | Sample_relation | Reanalyzed by: GSM753252
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517656 | GPL3921 |
|
HumanAorticEndothelialCells_Individual65_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 65
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517656
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517656/suppl/GSM517656.cel.gz
| | Sample_relation | Reanalyzed by: GSM753253
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517657 | GPL3921 |
|
HumanAorticEndothelialCells_Individual66_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 66
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517657
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517657/suppl/GSM517657.cel.gz
| | Sample_relation | Reanalyzed by: GSM753254
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517658 | GPL3921 |
|
HumanAorticEndothelialCells_Individual66_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 66
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517658
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517658/suppl/GSM517658.cel.gz
| | Sample_relation | Reanalyzed by: GSM753255
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517659 | GPL3921 |
|
HumanAorticEndothelialCells_Individual66_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 66
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517659
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517659/suppl/GSM517659.cel.gz
| | Sample_relation | Reanalyzed by: GSM753256
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517660 | GPL3921 |
|
HumanAorticEndothelialCells_Individual66_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 66
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517660
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517660/suppl/GSM517660.cel.gz
| | Sample_relation | Reanalyzed by: GSM753257
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517661 | GPL3921 |
|
HumanAorticEndothelialCells_Individual68_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 68
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517661
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517661/suppl/GSM517661.cel.gz
| | Sample_relation | Reanalyzed by: GSM753258
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517662 | GPL3921 |
|
HumanAorticEndothelialCells_Individual68_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 68
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517662
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517662/suppl/GSM517662.cel.gz
| | Sample_relation | Reanalyzed by: GSM753259
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517663 | GPL3921 |
|
HumanAorticEndothelialCells_Individual68_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 68
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517663
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517663/suppl/GSM517663.cel.gz
| | Sample_relation | Reanalyzed by: GSM753260
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517664 | GPL3921 |
|
HumanAorticEndothelialCells_Individual68_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 68
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517664
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517664/suppl/GSM517664.cel.gz
| | Sample_relation | Reanalyzed by: GSM753261
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517665 | GPL3921 |
|
HumanAorticEndothelialCells_Individual69_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 69
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517665
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517665/suppl/GSM517665.cel.gz
| | Sample_relation | Reanalyzed by: GSM753262
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517666 | GPL3921 |
|
HumanAorticEndothelialCells_Individual69_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 69
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517666
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517666/suppl/GSM517666.cel.gz
| | Sample_relation | Reanalyzed by: GSM753263
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517667 | GPL3921 |
|
HumanAorticEndothelialCells_Individual69_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 69
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517667
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517667/suppl/GSM517667.cel.gz
| | Sample_relation | Reanalyzed by: GSM753264
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517668 | GPL3921 |
|
HumanAorticEndothelialCells_Individual69_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 69
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517668
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517668/suppl/GSM517668.cel.gz
| | Sample_relation | Reanalyzed by: GSM753265
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517669 | GPL3921 |
|
HumanAorticEndothelialCells_Individual70_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 70
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517669
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517669/suppl/GSM517669.cel.gz
| | Sample_relation | Reanalyzed by: GSM753266
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517670 | GPL3921 |
|
HumanAorticEndothelialCells_Individual70_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 70
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517670
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517670/suppl/GSM517670.cel.gz
| | Sample_relation | Reanalyzed by: GSM753267
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517671 | GPL3921 |
|
HumanAorticEndothelialCells_Individual70_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 70
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517671
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517671/suppl/GSM517671.cel.gz
| | Sample_relation | Reanalyzed by: GSM753268
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517672 | GPL3921 |
|
HumanAorticEndothelialCells_Individual70_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 70
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517672
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517672/suppl/GSM517672.cel.gz
| | Sample_relation | Reanalyzed by: GSM753269
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517673 | GPL3921 |
|
HumanAorticEndothelialCells_Individual71_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 71
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517673
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517673/suppl/GSM517673.cel.gz
| | Sample_relation | Reanalyzed by: GSM753270
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517674 | GPL3921 |
|
HumanAorticEndothelialCells_Individual71_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 71
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517674
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517674/suppl/GSM517674.cel.gz
| | Sample_relation | Reanalyzed by: GSM753271
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517675 | GPL3921 |
|
HumanAorticEndothelialCells_Individual71_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 71
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517675
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517675/suppl/GSM517675.cel.gz
| | Sample_relation | Reanalyzed by: GSM753272
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517676 | GPL3921 |
|
HumanAorticEndothelialCells_Individual71_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 71
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517676
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517676/suppl/GSM517676.cel.gz
| | Sample_relation | Reanalyzed by: GSM753273
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517677 | GPL3921 |
|
HumanAorticEndothelialCells_Individual83_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 83
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517677
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517677/suppl/GSM517677.cel.gz
| | Sample_relation | Reanalyzed by: GSM753274
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517678 | GPL3921 |
|
HumanAorticEndothelialCells_Individual83_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 83
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517678
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517678/suppl/GSM517678.cel.gz
| | Sample_relation | Reanalyzed by: GSM753275
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517679 | GPL3921 |
|
HumanAorticEndothelialCells_Individual83_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 83
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517679
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517679/suppl/GSM517679.cel.gz
| | Sample_relation | Reanalyzed by: GSM753276
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517680 | GPL3921 |
|
HumanAorticEndothelialCells_Individual83_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 83
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517680
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517680/suppl/GSM517680.cel.gz
| | Sample_relation | Reanalyzed by: GSM753277
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517681 | GPL3921 |
|
HumanAorticEndothelialCells_Individual84_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 84
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517681
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517681/suppl/GSM517681.cel.gz
| | Sample_relation | Reanalyzed by: GSM753278
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517682 | GPL3921 |
|
HumanAorticEndothelialCells_Individual84_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 84
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517682
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517682/suppl/GSM517682.cel.gz
| | Sample_relation | Reanalyzed by: GSM753279
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517683 | GPL3921 |
|
HumanAorticEndothelialCells_Individual84_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 84
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517683
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517683/suppl/GSM517683.cel.gz
| | Sample_relation | Reanalyzed by: GSM753280
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517685 | GPL3921 |
|
HumanAorticEndothelialCells_Individual85_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 85
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517685
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517685/suppl/GSM517685.cel.gz
| | Sample_relation | Reanalyzed by: GSM753282
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517686 | GPL3921 |
|
HumanAorticEndothelialCells_Individual85_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 85
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517686
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517686/suppl/GSM517686.cel.gz
| | Sample_relation | Reanalyzed by: GSM753283
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517687 | GPL3921 |
|
HumanAorticEndothelialCells_Individual85_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 85
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517687
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517687/suppl/GSM517687.cel.gz
| | Sample_relation | Reanalyzed by: GSM753284
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517688 | GPL3921 |
|
HumanAorticEndothelialCells_Individual86_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 86
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517688
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517688/suppl/GSM517688.cel.gz
| | Sample_relation | Reanalyzed by: GSM753285
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517689 | GPL3921 |
|
HumanAorticEndothelialCells_Individual86_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 86
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517689
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517689/suppl/GSM517689.cel.gz
| | Sample_relation | Reanalyzed by: GSM753286
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517690 | GPL3921 |
|
HumanAorticEndothelialCells_Individual86_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 86
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517690
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517690/suppl/GSM517690.cel.gz
| | Sample_relation | Reanalyzed by: GSM753287
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517691 | GPL3921 |
|
HumanAorticEndothelialCells_Individual86_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 86
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517691
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517691/suppl/GSM517691.cel.gz
| | Sample_relation | Reanalyzed by: GSM753288
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517692 | GPL3921 |
|
HumanAorticEndothelialCells_Individual87_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 87
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517692
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517692/suppl/GSM517692.cel.gz
| | Sample_relation | Reanalyzed by: GSM753289
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517693 | GPL3921 |
|
HumanAorticEndothelialCells_Individual87_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 87
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517693
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517693/suppl/GSM517693.cel.gz
| | Sample_relation | Reanalyzed by: GSM753290
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517694 | GPL3921 |
|
HumanAorticEndothelialCells_Individual87_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 87
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517694
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517694/suppl/GSM517694.cel.gz
| | Sample_relation | Reanalyzed by: GSM753291
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517695 | GPL3921 |
|
HumanAorticEndothelialCells_Individual87_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 87
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517695
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517695/suppl/GSM517695.cel.gz
| | Sample_relation | Reanalyzed by: GSM753292
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517696 | GPL3921 |
|
HumanAorticEndothelialCells_Individual88_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 88
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517696
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517696/suppl/GSM517696.cel.gz
| | Sample_relation | Reanalyzed by: GSM753293
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517697 | GPL3921 |
|
HumanAorticEndothelialCells_Individual88_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 88
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517697
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517697/suppl/GSM517697.cel.gz
| | Sample_relation | Reanalyzed by: GSM753294
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517698 | GPL3921 |
|
HumanAorticEndothelialCells_Individual88_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 88
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517698
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517698/suppl/GSM517698.cel.gz
| | Sample_relation | Reanalyzed by: GSM753295
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517699 | GPL3921 |
|
HumanAorticEndothelialCells_Individual88_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 88
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517699
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517699/suppl/GSM517699.cel.gz
| | Sample_relation | Reanalyzed by: GSM753296
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517700 | GPL3921 |
|
HumanAorticEndothelialCells_Individual89_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 89
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517700
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517700/suppl/GSM517700.cel.gz
| | Sample_relation | Reanalyzed by: GSM753297
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517701 | GPL3921 |
|
HumanAorticEndothelialCells_Individual89_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 89
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517701
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517701/suppl/GSM517701.cel.gz
| | Sample_relation | Reanalyzed by: GSM753298
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517702 | GPL3921 |
|
HumanAorticEndothelialCells_Individual89_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 89
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517702
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517702/suppl/GSM517702.cel.gz
| | Sample_relation | Reanalyzed by: GSM753299
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517703 | GPL3921 |
|
HumanAorticEndothelialCells_Individual89_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 89
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517703
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517703/suppl/GSM517703.cel.gz
| | Sample_relation | Reanalyzed by: GSM753300
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517704 | GPL3921 |
|
HumanAorticEndothelialCells_Individual90_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 90
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517704
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517704/suppl/GSM517704.cel.gz
| | Sample_relation | Reanalyzed by: GSM753301
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517705 | GPL3921 |
|
HumanAorticEndothelialCells_Individual90_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 90
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517705
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517705/suppl/GSM517705.cel.gz
| | Sample_relation | Reanalyzed by: GSM753302
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517706 | GPL3921 |
|
HumanAorticEndothelialCells_Individual90_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 90
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517706
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517706/suppl/GSM517706.cel.gz
| | Sample_relation | Reanalyzed by: GSM753303
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517707 | GPL3921 |
|
HumanAorticEndothelialCells_Individual90_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 90
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517707
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517707/suppl/GSM517707.cel.gz
| | Sample_relation | Reanalyzed by: GSM753304
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517708 | GPL3921 |
|
HumanAorticEndothelialCells_Individual91_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 91
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517708
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517708/suppl/GSM517708.cel.gz
| | Sample_relation | Reanalyzed by: GSM753305
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517709 | GPL3921 |
|
HumanAorticEndothelialCells_Individual91_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 91
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517709
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517709/suppl/GSM517709.cel.gz
| | Sample_relation | Reanalyzed by: GSM753306
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517710 | GPL3921 |
|
HumanAorticEndothelialCells_Individual91_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 91
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517710
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517710/suppl/GSM517710.cel.gz
| | Sample_relation | Reanalyzed by: GSM753307
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517711 | GPL3921 |
|
HumanAorticEndothelialCells_Individual91_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 91
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517711
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517711/suppl/GSM517711.cel.gz
| | Sample_relation | Reanalyzed by: GSM753308
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517712 | GPL3921 |
|
HumanAorticEndothelialCells_Individual92_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 92
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517712
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517712/suppl/GSM517712.cel.gz
| | Sample_relation | Reanalyzed by: GSM753309
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517713 | GPL3921 |
|
HumanAorticEndothelialCells_Individual92_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 92
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517713
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517713/suppl/GSM517713.cel.gz
| | Sample_relation | Reanalyzed by: GSM753310
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517714 | GPL3921 |
|
HumanAorticEndothelialCells_Individual92_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 92
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517714
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517714/suppl/GSM517714.cel.gz
| | Sample_relation | Reanalyzed by: GSM753311
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517715 | GPL3921 |
|
HumanAorticEndothelialCells_Individual92_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 92
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517715
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517715/suppl/GSM517715.cel.gz
| | Sample_relation | Reanalyzed by: GSM753312
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517716 | GPL3921 |
|
HumanAorticEndothelialCells_Individual93_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 93
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517716
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517716/suppl/GSM517716.cel.gz
| | Sample_relation | Reanalyzed by: GSM753313
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517717 | GPL3921 |
|
HumanAorticEndothelialCells_Individual93_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 93
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517717
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517717/suppl/GSM517717.cel.gz
| | Sample_relation | Reanalyzed by: GSM753314
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517718 | GPL3921 |
|
HumanAorticEndothelialCells_Individual93_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 93
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517718
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517718/suppl/GSM517718.cel.gz
| | Sample_relation | Reanalyzed by: GSM753315
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517719 | GPL3921 |
|
HumanAorticEndothelialCells_Individual93_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 93
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517719
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517719/suppl/GSM517719.cel.gz
| | Sample_relation | Reanalyzed by: GSM753316
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517720 | GPL3921 |
|
HumanAorticEndothelialCells_Individual95_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 95
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517720
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517720/suppl/GSM517720.cel.gz
| | Sample_relation | Reanalyzed by: GSM753317
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517721 | GPL3921 |
|
HumanAorticEndothelialCells_Individual95_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 95
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517721
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517721/suppl/GSM517721.cel.gz
| | Sample_relation | Reanalyzed by: GSM753318
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517722 | GPL3921 |
|
HumanAorticEndothelialCells_Individual95_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 95
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517722
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517722/suppl/GSM517722.cel.gz
| | Sample_relation | Reanalyzed by: GSM753319
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517723 | GPL3921 |
|
HumanAorticEndothelialCells_Individual95_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 95
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517723
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517723/suppl/GSM517723.cel.gz
| | Sample_relation | Reanalyzed by: GSM753320
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517724 | GPL3921 |
|
HumanAorticEndothelialCells_Individual96_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 96
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517724
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517724/suppl/GSM517724.cel.gz
| | Sample_relation | Reanalyzed by: GSM753321
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517725 | GPL3921 |
|
HumanAorticEndothelialCells_Individual96_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 96
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517725
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517725/suppl/GSM517725.cel.gz
| | Sample_relation | Reanalyzed by: GSM753322
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517726 | GPL3921 |
|
HumanAorticEndothelialCells_Individual96_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 96
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517726
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517726/suppl/GSM517726.cel.gz
| | Sample_relation | Reanalyzed by: GSM753323
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517727 | GPL3921 |
|
HumanAorticEndothelialCells_Individual96_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 96
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517727
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517727/suppl/GSM517727.cel.gz
| | Sample_relation | Reanalyzed by: GSM753324
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517728 | GPL3921 |
|
HumanAorticEndothelialCells_Individual97_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 97
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517728
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517728/suppl/GSM517728.cel.gz
| | Sample_relation | Reanalyzed by: GSM753325
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517729 | GPL3921 |
|
HumanAorticEndothelialCells_Individual97_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 97
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517729
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517729/suppl/GSM517729.cel.gz
| | Sample_relation | Reanalyzed by: GSM753326
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517730 | GPL3921 |
|
HumanAorticEndothelialCells_Individual97_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 97
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517730
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517730/suppl/GSM517730.cel.gz
| | Sample_relation | Reanalyzed by: GSM753327
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517731 | GPL3921 |
|
HumanAorticEndothelialCells_Individual97_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 97
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517731
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517731/suppl/GSM517731.cel.gz
| | Sample_relation | Reanalyzed by: GSM753328
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517732 | GPL3921 |
|
HumanAorticEndothelialCells_Individual98_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 98
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517732
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517732/suppl/GSM517732.cel.gz
| | Sample_relation | Reanalyzed by: GSM753329
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517733 | GPL3921 |
|
HumanAorticEndothelialCells_Individual98_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 98
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517733
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517733/suppl/GSM517733.cel.gz
| | Sample_relation | Reanalyzed by: GSM753330
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517734 | GPL3921 |
|
HumanAorticEndothelialCells_Individual98_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 98
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517734
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517734/suppl/GSM517734.cel.gz
| | Sample_relation | Reanalyzed by: GSM753331
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517735 | GPL3921 |
|
HumanAorticEndothelialCells_Individual98_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 98
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517735
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517735/suppl/GSM517735.cel.gz
| | Sample_relation | Reanalyzed by: GSM753332
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517736 | GPL3921 |
|
HumanAorticEndothelialCells_Individual99_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 99
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517736
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517736/suppl/GSM517736.cel.gz
| | Sample_relation | Reanalyzed by: GSM753333
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517737 | GPL3921 |
|
HumanAorticEndothelialCells_Individual99_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 99
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517737
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517737/suppl/GSM517737.cel.gz
| | Sample_relation | Reanalyzed by: GSM753334
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517738 | GPL3921 |
|
HumanAorticEndothelialCells_Individual99_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 99
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517738
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517738/suppl/GSM517738.cel.gz
| | Sample_relation | Reanalyzed by: GSM753335
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517739 | GPL3921 |
|
HumanAorticEndothelialCells_Individual99_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 99
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517739
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517739/suppl/GSM517739.cel.gz
| | Sample_relation | Reanalyzed by: GSM753336
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517740 | GPL3921 |
|
HumanAorticEndothelialCells_Individual100_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 100
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517740
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517740/suppl/GSM517740.cel.gz
| | Sample_relation | Reanalyzed by: GSM753337
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517741 | GPL3921 |
|
HumanAorticEndothelialCells_Individual100_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 100
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517741
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517741/suppl/GSM517741.cel.gz
| | Sample_relation | Reanalyzed by: GSM753338
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517742 | GPL3921 |
|
HumanAorticEndothelialCells_Individual100_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 100
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517742
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517742/suppl/GSM517742.cel.gz
| | Sample_relation | Reanalyzed by: GSM753339
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517743 | GPL3921 |
|
HumanAorticEndothelialCells_Individual100_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 100
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517743
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517743/suppl/GSM517743.cel.gz
| | Sample_relation | Reanalyzed by: GSM753340
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517744 | GPL3921 |
|
HumanAorticEndothelialCells_Individual101_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 101
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517744
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517744/suppl/GSM517744.cel.gz
| | Sample_relation | Reanalyzed by: GSM753341
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517745 | GPL3921 |
|
HumanAorticEndothelialCells_Individual101_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 101
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517745
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517745/suppl/GSM517745.cel.gz
| | Sample_relation | Reanalyzed by: GSM753342
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517746 | GPL3921 |
|
HumanAorticEndothelialCells_Individual101_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 101
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517746
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517746/suppl/GSM517746.cel.gz
| | Sample_relation | Reanalyzed by: GSM753343
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517747 | GPL3921 |
|
HumanAorticEndothelialCells_Individual101_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 101
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517747
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517747/suppl/GSM517747.cel.gz
| | Sample_relation | Reanalyzed by: GSM753344
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517748 | GPL3921 |
|
HumanAorticEndothelialCells_Individual102_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 102
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517748
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517748/suppl/GSM517748.cel.gz
| | Sample_relation | Reanalyzed by: GSM753345
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517749 | GPL3921 |
|
HumanAorticEndothelialCells_Individual102_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 102
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517749
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517749/suppl/GSM517749.cel.gz
| | Sample_relation | Reanalyzed by: GSM753346
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517750 | GPL3921 |
|
HumanAorticEndothelialCells_Individual102_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 102
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517750
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517750/suppl/GSM517750.cel.gz
| | Sample_relation | Reanalyzed by: GSM753347
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517751 | GPL3921 |
|
HumanAorticEndothelialCells_Individual102_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 102
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517751
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517751/suppl/GSM517751.cel.gz
| | Sample_relation | Reanalyzed by: GSM753348
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517752 | GPL3921 |
|
HumanAorticEndothelialCells_Individual103_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 103
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517752
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517752/suppl/GSM517752.cel.gz
| | Sample_relation | Reanalyzed by: GSM753349
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517753 | GPL3921 |
|
HumanAorticEndothelialCells_Individual103_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 103
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517753
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517753/suppl/GSM517753.cel.gz
| | Sample_relation | Reanalyzed by: GSM753350
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517754 | GPL3921 |
|
HumanAorticEndothelialCells_Individual103_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 103
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517754
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517754/suppl/GSM517754.cel.gz
| | Sample_relation | Reanalyzed by: GSM753351
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517755 | GPL3921 |
|
HumanAorticEndothelialCells_Individual103_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 103
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517755
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517755/suppl/GSM517755.cel.gz
| | Sample_relation | Reanalyzed by: GSM753352
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517756 | GPL3921 |
|
HumanAorticEndothelialCells_Individual104_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 104
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517756
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517756/suppl/GSM517756.cel.gz
| | Sample_relation | Reanalyzed by: GSM753353
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517757 | GPL3921 |
|
HumanAorticEndothelialCells_Individual104_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 104
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517757
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517757/suppl/GSM517757.cel.gz
| | Sample_relation | Reanalyzed by: GSM753354
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517758 | GPL3921 |
|
HumanAorticEndothelialCells_Individual104_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 104
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517758
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517758/suppl/GSM517758.cel.gz
| | Sample_relation | Reanalyzed by: GSM753355
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517759 | GPL3921 |
|
HumanAorticEndothelialCells_Individual104_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 104
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517759
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517759/suppl/GSM517759.cel.gz
| | Sample_relation | Reanalyzed by: GSM753356
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517760 | GPL3921 |
|
HumanAorticEndothelialCells_Individual105_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 105
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517760
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517760/suppl/GSM517760.cel.gz
| | Sample_relation | Reanalyzed by: GSM753357
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517761 | GPL3921 |
|
HumanAorticEndothelialCells_Individual105_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 105
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517761
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517761/suppl/GSM517761.cel.gz
| | Sample_relation | Reanalyzed by: GSM753358
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517762 | GPL3921 |
|
HumanAorticEndothelialCells_Individual105_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 105
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517762
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517762/suppl/GSM517762.cel.gz
| | Sample_relation | Reanalyzed by: GSM753359
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517763 | GPL3921 |
|
HumanAorticEndothelialCells_Individual106_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 106
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517763
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517763/suppl/GSM517763.cel.gz
| | Sample_relation | Reanalyzed by: GSM753360
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517764 | GPL3921 |
|
HumanAorticEndothelialCells_Individual106_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 106
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517764
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517764/suppl/GSM517764.cel.gz
| | Sample_relation | Reanalyzed by: GSM753361
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517765 | GPL3921 |
|
HumanAorticEndothelialCells_Individual106_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 106
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517765
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517765/suppl/GSM517765.cel.gz
| | Sample_relation | Reanalyzed by: GSM753362
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517766 | GPL3921 |
|
HumanAorticEndothelialCells_Individual106_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 106
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517766
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517766/suppl/GSM517766.cel.gz
| | Sample_relation | Reanalyzed by: GSM753363
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517767 | GPL3921 |
|
HumanAorticEndothelialCells_Individual107_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 107
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517767
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517767/suppl/GSM517767.cel.gz
| | Sample_relation | Reanalyzed by: GSM753364
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517768 | GPL3921 |
|
HumanAorticEndothelialCells_Individual107_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 107
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517768
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517768/suppl/GSM517768.cel.gz
| | Sample_relation | Reanalyzed by: GSM753365
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517769 | GPL3921 |
|
HumanAorticEndothelialCells_Individual107_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 107
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517769
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517769/suppl/GSM517769.cel.gz
| | Sample_relation | Reanalyzed by: GSM753366
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517770 | GPL3921 |
|
HumanAorticEndothelialCells_Individual107_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 107
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517770
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517770/suppl/GSM517770.cel.gz
| | Sample_relation | Reanalyzed by: GSM753367
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517771 | GPL3921 |
|
HumanAorticEndothelialCells_Individual108_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 108
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517771
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517771/suppl/GSM517771.cel.gz
| | Sample_relation | Reanalyzed by: GSM753368
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517772 | GPL3921 |
|
HumanAorticEndothelialCells_Individual108_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 108
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517772
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517772/suppl/GSM517772.cel.gz
| | Sample_relation | Reanalyzed by: GSM753369
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517773 | GPL3921 |
|
HumanAorticEndothelialCells_Individual108_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 108
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517773
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517773/suppl/GSM517773.cel.gz
| | Sample_relation | Reanalyzed by: GSM753370
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517774 | GPL3921 |
|
HumanAorticEndothelialCells_Individual108_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 108
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517774
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517774/suppl/GSM517774.cel.gz
| | Sample_relation | Reanalyzed by: GSM753371
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517775 | GPL3921 |
|
HumanAorticEndothelialCells_Individual110_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 110
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517775
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517775/suppl/GSM517775.cel.gz
| | Sample_relation | Reanalyzed by: GSM753372
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517776 | GPL3921 |
|
HumanAorticEndothelialCells_Individual110_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 110
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517776
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517776/suppl/GSM517776.cel.gz
| | Sample_relation | Reanalyzed by: GSM753373
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517777 | GPL3921 |
|
HumanAorticEndothelialCells_Individual110_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 110
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517777
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517777/suppl/GSM517777.cel.gz
| | Sample_relation | Reanalyzed by: GSM753374
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517778 | GPL3921 |
|
HumanAorticEndothelialCells_Individual110_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 110
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517778
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517778/suppl/GSM517778.cel.gz
| | Sample_relation | Reanalyzed by: GSM753375
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517779 | GPL3921 |
|
HumanAorticEndothelialCells_Individual111_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 111
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517779
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517779/suppl/GSM517779.cel.gz
| | Sample_relation | Reanalyzed by: GSM753376
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517780 | GPL3921 |
|
HumanAorticEndothelialCells_Individual111_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 111
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517780
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517780/suppl/GSM517780.cel.gz
| | Sample_relation | Reanalyzed by: GSM753377
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517781 | GPL3921 |
|
HumanAorticEndothelialCells_Individual111_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 111
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517781
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517781/suppl/GSM517781.cel.gz
| | Sample_relation | Reanalyzed by: GSM753378
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517782 | GPL3921 |
|
HumanAorticEndothelialCells_Individual111_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 111
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517782
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517782/suppl/GSM517782.cel.gz
| | Sample_relation | Reanalyzed by: GSM753379
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517783 | GPL3921 |
|
HumanAorticEndothelialCells_Individual113_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 113
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517783
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517783/suppl/GSM517783.cel.gz
| | Sample_relation | Reanalyzed by: GSM753380
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517784 | GPL3921 |
|
HumanAorticEndothelialCells_Individual113_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 113
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517784
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517784/suppl/GSM517784.cel.gz
| | Sample_relation | Reanalyzed by: GSM753381
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517785 | GPL3921 |
|
HumanAorticEndothelialCells_Individual113_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 113
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517785
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517785/suppl/GSM517785.cel.gz
| | Sample_relation | Reanalyzed by: GSM753382
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517786 | GPL3921 |
|
HumanAorticEndothelialCells_Individual113_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 113
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517786
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517786/suppl/GSM517786.cel.gz
| | Sample_relation | Reanalyzed by: GSM753383
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517787 | GPL3921 |
|
HumanAorticEndothelialCells_Individual114_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 114
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517787
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517787/suppl/GSM517787.cel.gz
| | Sample_relation | Reanalyzed by: GSM753384
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517788 | GPL3921 |
|
HumanAorticEndothelialCells_Individual114_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 114
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517788
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517788/suppl/GSM517788.cel.gz
| | Sample_relation | Reanalyzed by: GSM753385
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517789 | GPL3921 |
|
HumanAorticEndothelialCells_Individual114_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 114
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517789
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517789/suppl/GSM517789.cel.gz
| | Sample_relation | Reanalyzed by: GSM753386
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517790 | GPL3921 |
|
HumanAorticEndothelialCells_Individual114_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 114
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517790
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517790/suppl/GSM517790.cel.gz
| | Sample_relation | Reanalyzed by: GSM753387
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517791 | GPL3921 |
|
HumanAorticEndothelialCells_Individual115_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 115
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517791
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517791/suppl/GSM517791.cel.gz
| | Sample_relation | Reanalyzed by: GSM753388
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517792 | GPL3921 |
|
HumanAorticEndothelialCells_Individual115_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 115
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517792
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517792/suppl/GSM517792.cel.gz
| | Sample_relation | Reanalyzed by: GSM753389
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517793 | GPL3921 |
|
HumanAorticEndothelialCells_Individual115_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 115
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517793
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517793/suppl/GSM517793.cel.gz
| | Sample_relation | Reanalyzed by: GSM753390
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517794 | GPL3921 |
|
HumanAorticEndothelialCells_Individual115_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 115
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517794
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517794/suppl/GSM517794.cel.gz
| | Sample_relation | Reanalyzed by: GSM753391
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517795 | GPL3921 |
|
HumanAorticEndothelialCells_Individual116_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 116
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517795
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517795/suppl/GSM517795.cel.gz
| | Sample_relation | Reanalyzed by: GSM753392
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517796 | GPL3921 |
|
HumanAorticEndothelialCells_Individual116_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 116
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517796
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517796/suppl/GSM517796.cel.gz
| | Sample_relation | Reanalyzed by: GSM753393
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517797 | GPL3921 |
|
HumanAorticEndothelialCells_Individual116_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 116
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517797
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517797/suppl/GSM517797.cel.gz
| | Sample_relation | Reanalyzed by: GSM753394
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517798 | GPL3921 |
|
HumanAorticEndothelialCells_Individual116_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 116
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517798
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517798/suppl/GSM517798.cel.gz
| | Sample_relation | Reanalyzed by: GSM753395
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517799 | GPL3921 |
|
HumanAorticEndothelialCells_Individual117_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 117
batch: 2
gender: Female
replicate: 1
|
control
|
| Sample_geo_accession | GSM517799
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517799/suppl/GSM517799.cel.gz
| | Sample_relation | Reanalyzed by: GSM753396
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517800 | GPL3921 |
|
HumanAorticEndothelialCells_Individual117_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 117
batch: 2
gender: Female
replicate: 2
|
control
|
| Sample_geo_accession | GSM517800
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517800/suppl/GSM517800.cel.gz
| | Sample_relation | Reanalyzed by: GSM753397
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517801 | GPL3921 |
|
HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 117
batch: 2
gender: Female
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517801
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517801/suppl/GSM517801.cel.gz
| | Sample_relation | Reanalyzed by: GSM753398
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517802 | GPL3921 |
|
HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 117
batch: 2
gender: Female
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517802
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517802/suppl/GSM517802.cel.gz
| | Sample_relation | Reanalyzed by: GSM753399
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517803 | GPL3921 |
|
HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate3
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 117
batch: 2
gender: Female
replicate: 3
|
OxPAPC
|
| Sample_geo_accession | GSM517803
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517803/suppl/GSM517803.cel.gz
| | Sample_relation | Reanalyzed by: GSM753400
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517804 | GPL3921 |
|
HumanAorticEndothelialCells_Individual117_OxPAPCTreatment_replicate4
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 117
batch: 2
gender: Female
replicate: 4
|
OxPAPC
|
| Sample_geo_accession | GSM517804
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517804/suppl/GSM517804.cel.gz
| | Sample_relation | Reanalyzed by: GSM753401
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517805 | GPL3921 |
|
HumanAorticEndothelialCells_Individual118_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 118
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517805
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517805/suppl/GSM517805.cel.gz
| | Sample_relation | Reanalyzed by: GSM753402
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517806 | GPL3921 |
|
HumanAorticEndothelialCells_Individual118_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 118
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517806
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517806/suppl/GSM517806.cel.gz
| | Sample_relation | Reanalyzed by: GSM753403
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517807 | GPL3921 |
|
HumanAorticEndothelialCells_Individual118_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 118
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517807
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517807/suppl/GSM517807.cel.gz
| | Sample_relation | Reanalyzed by: GSM753404
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517808 | GPL3921 |
|
HumanAorticEndothelialCells_Individual118_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 118
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517808
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517808/suppl/GSM517808.cel.gz
| | Sample_relation | Reanalyzed by: GSM753405
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517809 | GPL3921 |
|
HumanAorticEndothelialCells_Individual118_OxPAPCTreatment_replicate3
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 118
batch: 2
gender: Male
replicate: 3
|
OxPAPC
|
| Sample_geo_accession | GSM517809
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517809/suppl/GSM517809.cel.gz
| | Sample_relation | Reanalyzed by: GSM753406
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517810 | GPL3921 |
|
HumanAorticEndothelialCells_Individual119_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 119
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517810
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517810/suppl/GSM517810.cel.gz
| | Sample_relation | Reanalyzed by: GSM753407
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517811 | GPL3921 |
|
HumanAorticEndothelialCells_Individual119_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 119
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517811
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517811/suppl/GSM517811.cel.gz
| | Sample_relation | Reanalyzed by: GSM753408
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517812 | GPL3921 |
|
HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 119
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517812
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517812/suppl/GSM517812.cel.gz
| | Sample_relation | Reanalyzed by: GSM753409
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517813 | GPL3921 |
|
HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 119
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517813
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517813/suppl/GSM517813.cel.gz
| | Sample_relation | Reanalyzed by: GSM753410
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517814 | GPL3921 |
|
HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate3
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 119
batch: 2
gender: Male
replicate: 3
|
OxPAPC
|
| Sample_geo_accession | GSM517814
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517814/suppl/GSM517814.cel.gz
| | Sample_relation | Reanalyzed by: GSM753411
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517815 | GPL3921 |
|
HumanAorticEndothelialCells_Individual119_OxPAPCTreatment_replicate4
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 119
batch: 2
gender: Male
replicate: 4
|
OxPAPC
|
| Sample_geo_accession | GSM517815
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517815/suppl/GSM517815.cel.gz
| | Sample_relation | Reanalyzed by: GSM753412
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517816 | GPL3921 |
|
HumanAorticEndothelialCells_Individual120_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 120
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517816
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517816/suppl/GSM517816.cel.gz
| | Sample_relation | Reanalyzed by: GSM753413
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517817 | GPL3921 |
|
HumanAorticEndothelialCells_Individual120_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 120
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517817
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517817/suppl/GSM517817.cel.gz
| | Sample_relation | Reanalyzed by: GSM753414
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517818 | GPL3921 |
|
HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 120
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517818
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517818/suppl/GSM517818.cel.gz
| | Sample_relation | Reanalyzed by: GSM753415
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517819 | GPL3921 |
|
HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 120
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517819
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517819/suppl/GSM517819.cel.gz
| | Sample_relation | Reanalyzed by: GSM753416
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517820 | GPL3921 |
|
HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate3
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 120
batch: 2
gender: Male
replicate: 3
|
OxPAPC
|
| Sample_geo_accession | GSM517820
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517820/suppl/GSM517820.cel.gz
| | Sample_relation | Reanalyzed by: GSM753417
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517821 | GPL3921 |
|
HumanAorticEndothelialCells_Individual120_OxPAPCTreatment_replicate4
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 120
batch: 2
gender: Male
replicate: 4
|
OxPAPC
|
| Sample_geo_accession | GSM517821
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517821/suppl/GSM517821.cel.gz
| | Sample_relation | Reanalyzed by: GSM753418
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517822 | GPL3921 |
|
HumanAorticEndothelialCells_Individual121_controlTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: control
individual id: 121
batch: 2
gender: Male
replicate: 1
|
control
|
| Sample_geo_accession | GSM517822
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517822/suppl/GSM517822.cel.gz
| | Sample_relation | Reanalyzed by: GSM753419
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517823 | GPL3921 |
|
HumanAorticEndothelialCells_Individual121_controlTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: control
individual id: 121
batch: 2
gender: Male
replicate: 2
|
control
|
| Sample_geo_accession | GSM517823
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517823/suppl/GSM517823.cel.gz
| | Sample_relation | Reanalyzed by: GSM753420
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517824 | GPL3921 |
|
HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate1
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 121
batch: 2
gender: Male
replicate: 1
|
OxPAPC
|
| Sample_geo_accession | GSM517824
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517824/suppl/GSM517824.cel.gz
| | Sample_relation | Reanalyzed by: GSM753421
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517825 | GPL3921 |
|
HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate2
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 121
batch: 2
gender: Male
replicate: 2
|
OxPAPC
|
| Sample_geo_accession | GSM517825
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517825/suppl/GSM517825.cel.gz
| | Sample_relation | Reanalyzed by: GSM753422
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517826 | GPL3921 |
|
HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate3
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 121
batch: 2
gender: Male
replicate: 3
|
OxPAPC
|
| Sample_geo_accession | GSM517826
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517826/suppl/GSM517826.cel.gz
| | Sample_relation | Reanalyzed by: GSM753423
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
GSM517827 | GPL3921 |
|
HumanAorticEndothelialCells_Individual121_OxPAPCTreatment_replicate4
|
HumanAorticEndothelialCells
|
agent: OxPAPC
individual id: 121
batch: 2
gender: Male
replicate: 4
|
OxPAPC
|
| Sample_geo_accession | GSM517827
| | Sample_status | Public on Mar 03 2010
| | Sample_submission_date | Mar 03 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for 4 hours with or without 40 ug/ul Ox-PAPC
| | Sample_growth_protocol_ch1 | Cells were grown in standard 6-well TC plates to confluence at 37C, 5%CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cytoplasmic RNA was extracted using the Rneasy protocol from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to Affymetrix standard protocol
| | Sample_hyb_protocol | According to Affymetrix standard protocol
| | Sample_scan_protocol | According to Affymetrix standard protocol
| | Sample_data_processing | Data was processed with a custom CDF file (mask file HT_U133Amsk.cdf) using Just-RMA in Bioconductor/R and corrected for collection batch using ComBat in R
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Casey,,Romanoski
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gliman Dr.
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517827/suppl/GSM517827.cel.gz
| | Sample_relation | Reanalyzed by: GSM753424
| | Sample_series_id | GSE20060
| | Sample_data_row_count | 19490
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
