Search results for the GEO ID: GSE20164  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM506013 | GPL96 |
|
HS1035
|
SN, control
|
age: 72.4
tissue: substantia nigra
diagnosis: normal
sample type: control
gender: F
|
HS1035
|
| Sample_geo_accession | GSM506013
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506013/suppl/GSM506013.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506014 | GPL96 |
|
HS1037
|
SN, control
|
age: 88
tissue: substantia nigra
diagnosis: normal
sample type: control
gender: F
|
HS1037
|
| Sample_geo_accession | GSM506014
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506014/suppl/GSM506014.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506015 | GPL96 |
|
HS154
|
SN, PD
|
age: 74
tissue: substantia nigra
diagnosis: Parkinson's disease
gender: M
|
HS154
|
| Sample_geo_accession | GSM506015
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506015/suppl/GSM506015.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506016 | GPL96 |
|
HS185
|
SN, PD
|
age: 83
tissue: substantia nigra
diagnosis: Parkinson's disease
gender: M
|
HS185
|
| Sample_geo_accession | GSM506016
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506016/suppl/GSM506016.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506017 | GPL96 |
|
HS214
|
SN, PD
|
age: 83.6
tissue: substantia nigra
diagnosis: Parkinson's disease
gender: M
|
HS214
|
| Sample_geo_accession | GSM506017
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506017/suppl/GSM506017.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506018 | GPL96 |
|
HS258
|
SN, PD
|
age: 79
tissue: substantia nigra
diagnosis: Parkinson's disease
gender: F
|
HS258
|
| Sample_geo_accession | GSM506018
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506018/suppl/GSM506018.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506019 | GPL96 |
|
HS543B
|
SN, control
|
age: 72
tissue: substantia nigra
diagnosis: normal
sample type: control
gender: F
|
HS543B
|
| Sample_geo_accession | GSM506019
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506019/suppl/GSM506019.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506020 | GPL96 |
|
HS673
|
SN, control
|
age: 80.7
tissue: substantia nigra
diagnosis: normal
sample type: control
gender: F
|
HS673
|
| Sample_geo_accession | GSM506020
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506020/suppl/GSM506020.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506021 | GPL96 |
|
HS81A
|
SN, PD
|
age: 87
tissue: substantia nigra
diagnosis: Parkinson's disease
gender: M
|
HS81A
|
| Sample_geo_accession | GSM506021
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506021/suppl/GSM506021.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506022 | GPL96 |
|
HS872
|
SN, PD
|
age: 82.4
tissue: substantia nigra
diagnosis: Parkinson's disease
gender: F
|
HS872
|
| Sample_geo_accession | GSM506022
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506022/suppl/GSM506022.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
|
GSM506023 | GPL96 |
|
HS911
|
SN, control
|
age: 90
tissue: substantia nigra
diagnosis: normal
sample type: control
gender: M
|
HS911
|
| Sample_geo_accession | GSM506023
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Aug 16 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None.
| | Sample_growth_protocol_ch1 | None.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Bin,,Zheng
| | Sample_contact_department | Center for Neurologic Diseases
| | Sample_contact_institute | Brigham and Women's hospital
| | Sample_contact_address | 65 Landsdowne Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506023/suppl/GSM506023.CEL.gz
| | Sample_series_id | GSE20164
| | Sample_series_id | GSE20186
| | Sample_data_row_count | 22283
| | |
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