Search results for the GEO ID: GSE20168  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM506037 | GPL96 |
|
1206 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 57
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506037
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506037/suppl/GSM506037_1206_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506037/suppl/GSM506037_1206_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506039 | GPL96 |
|
1364 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 73
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506039
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506039/suppl/GSM506039_1364_BA9_Pm.mas5.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506039/suppl/GSM506039_1_1364_BA9_Pm.CEL.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506040 | GPL96 |
|
1401 BA9 Pf
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: female
age: 80
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506040
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506040/suppl/GSM506040_1401_BA9_Pf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506040/suppl/GSM506040_1401_BA9_Pf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506041 | GPL96 |
|
1516 BA9 Pf
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: female
age: 78
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506041
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506041/suppl/GSM506041_1516_BA9_Pf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506041/suppl/GSM506041_1516_BA9_Pf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506042 | GPL96 |
|
1647 BA9 Pf
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: female
age: 84
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506042
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506042/suppl/GSM506042_1647_BA9_Pf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506042/suppl/GSM506042_1647_BA9_Pf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506043 | GPL96 |
|
2515 BA9 Pf
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: female
age: 70
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506043
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506043/suppl/GSM506043_2515_BA9_Pf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506043/suppl/GSM506043_2515_BA9_Pf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506044 | GPL96 |
|
2525 BA9 Pf
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: female
age: 82
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506044
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506044/suppl/GSM506044_2525_BA9_Pf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506044/suppl/GSM506044_2525_BA9_Pf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506045 | GPL96 |
|
2685 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 70
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506045
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506045/suppl/GSM506045_2685_BA9_Pm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506045/suppl/GSM506045_2685_BA9_Pm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506046 | GPL96 |
|
2729 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 80
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506046
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506046/suppl/GSM506046_2729_BA9_Pm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506046/suppl/GSM506046_2729_BA9_Pm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506047 | GPL96 |
|
2829 BA9 Cf
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: female
age: 94
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506047
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506047/suppl/GSM506047_2829_BA9_Cf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506047/suppl/GSM506047_2829_BA9_Cf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506048 | GPL96 |
|
2977 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 70
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506048
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506048/suppl/GSM506048_2977_BA9_Pm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506048/suppl/GSM506048_2977_BA9_Pm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506050 | GPL96 |
|
3216 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 79
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506050
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506050/suppl/GSM506050_3216_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506050/suppl/GSM506050_3216_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506051 | GPL96 |
|
3236 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 67
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506051
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506051/suppl/GSM506051_3236_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506051/suppl/GSM506051_3236_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506052 | GPL96 |
|
3276 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 54
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506052
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506052/suppl/GSM506052_3276_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506052/suppl/GSM506052_3276_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506053 | GPL96 |
|
3397 BA9 Cf
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: female
age: 73
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506053
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506053/suppl/GSM506053_3397_BA9_Cf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506053/suppl/GSM506053_3397_BA9_Cf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506054 | GPL96 |
|
3401 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 82
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506054
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506054/suppl/GSM506054_3401_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506054/suppl/GSM506054_3401_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506055 | GPL96 |
|
3406 BA9 Cf
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: female
age: 72
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506055
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506055/suppl/GSM506055_3406_BA9_Cf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506055/suppl/GSM506055_3406_BA9_Cf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506056 | GPL96 |
|
3543 BA9 Cf
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: female
age: 73
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506056
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506056/suppl/GSM506056_3543_BA9_Cf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506056/suppl/GSM506056_3543_BA9_Cf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506057 | GPL96 |
|
3688 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 60
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506057
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506057/suppl/GSM506057_3688_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506057/suppl/GSM506057_3688_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506059 | GPL96 |
|
5138 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 75
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506059
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506059/suppl/GSM506059_5138_BA9_Pm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506059/suppl/GSM506059_5138_BA9_Pm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506060 | GPL96 |
|
5220 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 74
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506060
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506060/suppl/GSM506060_5220_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506060/suppl/GSM506060_5220_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506061 | GPL96 |
|
5398 BA9 Cf
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: female
age: 72
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506061
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506061/suppl/GSM506061_5398_BA9_Cf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506061/suppl/GSM506061_5398_BA9_Cf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506062 | GPL96 |
|
5441 BA9 Pf
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: female
age: 79
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506062
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506062/suppl/GSM506062_5441_BA9_Pf.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506062/suppl/GSM506062_5441_BA9_Pf.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506063 | GPL96 |
|
5476 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 67
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506063
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506063/suppl/GSM506063_5476_BA9_Pm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506063/suppl/GSM506063_5476_BA9_Pm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506064 | GPL96 |
|
5498 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 75
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506064
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506064/suppl/GSM506064_5498_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506064/suppl/GSM506064_5498_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506065 | GPL96 |
|
T55 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 81
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506065
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506065/suppl/GSM506065_T55_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506065/suppl/GSM506065_T55_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506066 | GPL96 |
|
T72 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 81
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506066
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506066/suppl/GSM506066_T72_BA9_Pm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506066/suppl/GSM506066_T72_BA9_Pm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506067 | GPL96 |
|
T98 BA9 Cm
|
Postmortem brain prefrontal cortex
|
disease state: control
gender: male
age: 55
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506067
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506067/suppl/GSM506067_T98_BA9_Cm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506067/suppl/GSM506067_T98_BA9_Cm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM506068 | GPL96 |
|
T127 BA9 Pm
|
Postmortem brain prefrontal cortex
|
disease state: Parkinson's disease
gender: male
age: 89
brain region: Prefrontal cortex area 9
|
One of 29 samples in this series
|
| Sample_geo_accession | GSM506068
| | Sample_status | Public on Feb 04 2010
| | Sample_submission_date | Feb 02 2010
| | Sample_last_update_date | Mar 10 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506068/suppl/GSM506068_T127_BA9_Pm.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506068/suppl/GSM506068_T127_BA9_Pm.mas5.CHP.gz
| | Sample_series_id | GSE20168
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
