Search results for the GEO ID: GSE20196  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM506622 | GPL570 |
|
Human synovial sarcoma SS001
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: BSS
reclassified histological subtype: MSS
syt-ssx fusion type: 2
|
SS001
|
| Sample_geo_accession | GSM506622
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506622/suppl/GSM506622.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506622/suppl/GSM506622.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506623 | GPL570 |
|
Human synovial sarcoma SS004
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: BSS
syt-ssx fusion type: 1
|
SS004
|
| Sample_geo_accession | GSM506623
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506623/suppl/GSM506623.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506623/suppl/GSM506623.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506624 | GPL570 |
|
Human synovial sarcoma SS005
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 2
|
SS005
|
| Sample_geo_accession | GSM506624
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506624/suppl/GSM506624.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506624/suppl/GSM506624.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506625 | GPL570 |
|
Human synovial sarcoma SS006
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS006
|
| Sample_geo_accession | GSM506625
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506625/suppl/GSM506625.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506625/suppl/GSM506625.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506626 | GPL570 |
|
Human synovial sarcoma SS007
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS007
|
| Sample_geo_accession | GSM506626
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506626/suppl/GSM506626.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506626/suppl/GSM506626.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506627 | GPL570 |
|
Human synovial sarcoma SS008
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS008
|
| Sample_geo_accession | GSM506627
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506627/suppl/GSM506627.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506627/suppl/GSM506627.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506628 | GPL570 |
|
Human synovial sarcoma SS012
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: BSS
syt-ssx fusion type: 1
|
SS012
|
| Sample_geo_accession | GSM506628
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506628/suppl/GSM506628.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506628/suppl/GSM506628.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506629 | GPL570 |
|
Human synovial sarcoma SS013
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
syt-ssx fusion type: 2
|
SS013
|
| Sample_geo_accession | GSM506629
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506629/suppl/GSM506629.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506629/suppl/GSM506629.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506630 | GPL570 |
|
Human synovial sarcoma SS041
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: PDSS
syt-ssx fusion type: 2
|
SS041
|
| Sample_geo_accession | GSM506630
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506630/suppl/GSM506630.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506630/suppl/GSM506630.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506631 | GPL570 |
|
Human synovial sarcoma SS042
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: PDSS
syt-ssx fusion type: 2
|
SS042
|
| Sample_geo_accession | GSM506631
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506631/suppl/GSM506631.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506631/suppl/GSM506631.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506632 | GPL570 |
|
Human synovial sarcoma SS043
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS043
|
| Sample_geo_accession | GSM506632
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506632/suppl/GSM506632.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506632/suppl/GSM506632.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506633 | GPL570 |
|
Human synovial sarcoma SS044
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: BSS
syt-ssx fusion type: 1
|
SS044
|
| Sample_geo_accession | GSM506633
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506633/suppl/GSM506633.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506633/suppl/GSM506633.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506634 | GPL570 |
|
Human synovial sarcoma SS045
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS045
|
| Sample_geo_accession | GSM506634
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506634/suppl/GSM506634.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506634/suppl/GSM506634.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506635 | GPL570 |
|
Human synovial sarcoma SS046
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS046
|
| Sample_geo_accession | GSM506635
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506635/suppl/GSM506635.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506635/suppl/GSM506635.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506636 | GPL570 |
|
Human synovial sarcoma SS047
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
syt-ssx fusion type: 2
|
SS047
|
| Sample_geo_accession | GSM506636
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506636/suppl/GSM506636.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506636/suppl/GSM506636.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506637 | GPL570 |
|
Human synovial sarcoma SS049
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 2
|
SS049
|
| Sample_geo_accession | GSM506637
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506637/suppl/GSM506637.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506637/suppl/GSM506637.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506638 | GPL570 |
|
Human synovial sarcoma SS050
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
syt-ssx fusion type: 1
|
SS050
|
| Sample_geo_accession | GSM506638
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506638/suppl/GSM506638.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506638/suppl/GSM506638.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506639 | GPL570 |
|
Human synovial sarcoma SS051
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: BSS
syt-ssx fusion type: 1
|
SS051
|
| Sample_geo_accession | GSM506639
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506639/suppl/GSM506639.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506639/suppl/GSM506639.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506640 | GPL570 |
|
Human synovial sarcoma SS052
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: BSS
syt-ssx fusion type: 1
|
SS052
|
| Sample_geo_accession | GSM506640
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506640/suppl/GSM506640.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506640/suppl/GSM506640.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506641 | GPL570 |
|
Human synovial sarcoma SS053
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
reclassified histological subtype: PDSS
syt-ssx fusion type: 1
|
SS053
|
| Sample_geo_accession | GSM506641
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506641/suppl/GSM506641.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506641/suppl/GSM506641.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506642 | GPL570 |
|
Human synovial sarcoma SS054
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: BSS
syt-ssx fusion type: 1
|
SS054
|
| Sample_geo_accession | GSM506642
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506642/suppl/GSM506642.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506642/suppl/GSM506642.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506643 | GPL570 |
|
Human synovial sarcoma SS055
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: BSS
syt-ssx fusion type: 1
|
SS055
|
| Sample_geo_accession | GSM506643
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506643/suppl/GSM506643.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506643/suppl/GSM506643.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506644 | GPL570 |
|
Human synovial sarcoma SS101
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 2
|
SS101
|
| Sample_geo_accession | GSM506644
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506644/suppl/GSM506644.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506644/suppl/GSM506644.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506645 | GPL570 |
|
Human synovial sarcoma SS102
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: PDSS
syt-ssx fusion type: 2
|
SS102
|
| Sample_geo_accession | GSM506645
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506645/suppl/GSM506645.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506645/suppl/GSM506645.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506646 | GPL570 |
|
Human synovial sarcoma SS106
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS106
|
| Sample_geo_accession | GSM506646
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506646/suppl/GSM506646.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506646/suppl/GSM506646.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506647 | GPL570 |
|
Human synovial sarcoma SS107
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS107
|
| Sample_geo_accession | GSM506647
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506647/suppl/GSM506647.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506647/suppl/GSM506647.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506648 | GPL570 |
|
Human synovial sarcoma SS109
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS109
|
| Sample_geo_accession | GSM506648
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506648/suppl/GSM506648.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506648/suppl/GSM506648.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506649 | GPL570 |
|
Human synovial sarcoma SS111
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
syt-ssx fusion type: 2
|
SS111
|
| Sample_geo_accession | GSM506649
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506649/suppl/GSM506649.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506649/suppl/GSM506649.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506650 | GPL570 |
|
Human synovial sarcoma SS112
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
syt-ssx fusion type: 2
|
SS112
|
| Sample_geo_accession | GSM506650
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506650/suppl/GSM506650.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506650/suppl/GSM506650.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506651 | GPL570 |
|
Human synovial sarcoma SS113
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
syt-ssx fusion type: 1
|
SS113
|
| Sample_geo_accession | GSM506651
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506651/suppl/GSM506651.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506651/suppl/GSM506651.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506652 | GPL570 |
|
Human synovial sarcoma SS114
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Male
histological subtype: MSS
syt-ssx fusion type: 1
|
SS114
|
| Sample_geo_accession | GSM506652
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506652/suppl/GSM506652.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506652/suppl/GSM506652.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506653 | GPL570 |
|
Human synovial sarcoma SS115
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: PDSS
syt-ssx fusion type: 1
|
SS115
|
| Sample_geo_accession | GSM506653
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506653/suppl/GSM506653.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506653/suppl/GSM506653.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506654 | GPL570 |
|
Human synovial sarcoma SS119
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: PDSS
syt-ssx fusion type: 1
|
SS119
|
| Sample_geo_accession | GSM506654
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506654/suppl/GSM506654.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506654/suppl/GSM506654.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
|
GSM506655 | GPL570 |
|
Human synovial sarcoma SSR01
|
Synovial sarcoma tumor tissue
|
tissue: Synovial sarcoma tumor tissue
sex: Female
histological subtype: MSS
syt-ssx fusion type: 1
|
SSR01
|
| Sample_geo_accession | GSM506655
| | Sample_status | Public on Sep 01 2010
| | Sample_submission_date | Feb 04 2010
| | Sample_last_update_date | Jun 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor samples were collected from a region of macroscopically high tumor content immediately after surgical excision and cryopreserved.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an Isogen reagent (Nippon Gene) and purified using an RNeasy MinElute cleanup kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 1 μg of total RNA with a one-cycle cDNA synthesis kit and 3’-amplification reagents for in vitro transcription labeling (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 μg of cRNA were hybridized for 16 hr at 45˚C on GeneChip Human Genome U133 plus 2.0 array (Affymetrix). Arrays were washed and stained in Fluidics Station 450 (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | The data were analyzed with GeneChip Operating Softwere version 1.3 (GCOS1.3, Affymetrix) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hitoshi,,Ichikawa
| | Sample_contact_email | hichikaw@ncc.go.jp
| | Sample_contact_phone | +81-3-3542-2511
| | Sample_contact_fax | +81-3-3248-1631
| | Sample_contact_laboratory | Genetics Division
| | Sample_contact_institute | National Cancer Center Research Institute
| | Sample_contact_address | 5-1-1 Tsukiji, Chuo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 104-0045
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506655/suppl/GSM506655.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506655/suppl/GSM506655.CHP.gz
| | Sample_series_id | GSE20196
| | Sample_data_row_count | 54675
| | |
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