Search results for the GEO ID: GSE20292  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM508708 | GPL96 |
|
1206 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 57
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508708
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508708/suppl/GSM508708.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508708/suppl/GSM508708.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508710 | GPL96 |
|
1364 SN Pm
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 73
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508710
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508710/suppl/GSM508710.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508710/suppl/GSM508710.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508711 | GPL96 |
|
1401 SN Pf
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 80
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508711
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508711/suppl/GSM508711.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508711/suppl/GSM508711.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508712 | GPL96 |
|
1647 SN Pf
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 84
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508712
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508712/suppl/GSM508712.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508712/suppl/GSM508712.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508713 | GPL96 |
|
2515 SN Pf
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 70
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508713
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508713/suppl/GSM508713.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508713/suppl/GSM508713.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508714 | GPL96 |
|
2525 SN Pf
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 82
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508714
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508714/suppl/GSM508714.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508714/suppl/GSM508714.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508715 | GPL96 |
|
2685 SN Pm
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 70
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508715
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508715/suppl/GSM508715.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508715/suppl/GSM508715.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508716 | GPL96 |
|
2729 SN Pm
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 80
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508716
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508716/suppl/GSM508716.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508716/suppl/GSM508716.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508717 | GPL96 |
|
2829 SN Cf
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 94
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508717
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508717/suppl/GSM508717.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508717/suppl/GSM508717.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508718 | GPL96 |
|
2977 SN Pm
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 70
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508718
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508718/suppl/GSM508718.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508718/suppl/GSM508718.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508720 | GPL96 |
|
3216 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 79
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508720
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508720/suppl/GSM508720.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508720/suppl/GSM508720.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508721 | GPL96 |
|
3236 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 67
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508721
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508721/suppl/GSM508721.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508721/suppl/GSM508721.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508722 | GPL96 |
|
3276 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 54
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508722
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508722/suppl/GSM508722.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508722/suppl/GSM508722.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508723 | GPL96 |
|
3397 SN Cf
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 73
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508723
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508723/suppl/GSM508723.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508723/suppl/GSM508723.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508724 | GPL96 |
|
3401 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 82
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508724
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508724/suppl/GSM508724.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508724/suppl/GSM508724.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508725 | GPL96 |
|
3406 SN Cf
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 72
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508725
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508725/suppl/GSM508725.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508725/suppl/GSM508725.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508726 | GPL96 |
|
3543 SN Cf
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 73
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508726
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508726/suppl/GSM508726.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508726/suppl/GSM508726.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508728 | GPL96 |
|
5138 SN Pm
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 75
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508728
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508728/suppl/GSM508728.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508728/suppl/GSM508728.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508729 | GPL96 |
|
5220 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 74
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508729
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508729/suppl/GSM508729.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508729/suppl/GSM508729.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508730 | GPL96 |
|
5398 SN Cf
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 72
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508730
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508730/suppl/GSM508730.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508730/suppl/GSM508730.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508731 | GPL96 |
|
5441 SN Pf
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 79
gender: female
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508731
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508731/suppl/GSM508731.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508731/suppl/GSM508731.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508732 | GPL96 |
|
5476 SN Pm
|
Postmortem brain whole substantia nigra
|
disease state: Parkinsons disease
age: 67
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508732
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508732/suppl/GSM508732.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508732/suppl/GSM508732.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508733 | GPL96 |
|
5498 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 75
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508733
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508733/suppl/GSM508733.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508733/suppl/GSM508733.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508734 | GPL96 |
|
T55 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 81
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508734
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508734/suppl/GSM508734.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508734/suppl/GSM508734.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM508735 | GPL96 |
|
T98 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 55
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM508735
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Feb 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508735/suppl/GSM508735.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM508nnn/GSM508735/suppl/GSM508735.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM521253 | GPL96 |
|
3576 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 59
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM521253
| | Sample_status | Public on Mar 12 2010
| | Sample_submission_date | Mar 11 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | To obtain the most stringent normalization possible on the dataset, we implemented the Robust Multichip Analysis method [Irizarry et al., [2003]] for the complete set of chips derived from each brain area. These robust multi-array analysis (RMA)-normalized data were imported into GeneSpring 7.0 (Silicon Genetics) for significance analysis and pattern analysis (clustering). To obtain the most accurate cross-gene error model for subsequent statistical analyses, the individual transcript data were further normalized within each respective brain area to the mean intensity measurements of the control subject samples for that brain area and transcript.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM521nnn/GSM521253/suppl/GSM521253.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM521nnn/GSM521253/suppl/GSM521253.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM606624 | GPL96 |
|
1134 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 41
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM606624
| | Sample_status | Public on Oct 13 2010
| | Sample_submission_date | Oct 08 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | MAS5.0 normalized in Gene Expression Console 1.0 (Affymetrix)
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM606nnn/GSM606624/suppl/GSM606624.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM606nnn/GSM606624/suppl/GSM606624.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM606625 | GPL96 |
|
1266 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 42
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM606625
| | Sample_status | Public on Oct 13 2010
| | Sample_submission_date | Oct 08 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | MAS5.0 normalized in Gene Expression Console 1.0 (Affymetrix)
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM606nnn/GSM606625/suppl/GSM606625.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM606nnn/GSM606625/suppl/GSM606625.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
GSM606626 | GPL96 |
|
3132 SN Cm
|
Postmortem brain whole substantia nigra
|
disease state: Control
age: 53
gender: male
brain region: Whole substantia nigra from postmortem brain
|
|
| Sample_geo_accession | GSM606626
| | Sample_status | Public on Oct 13 2010
| | Sample_submission_date | Oct 08 2010
| | Sample_last_update_date | Oct 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_hyb_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_scan_protocol | Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)
| | Sample_data_processing | MAS5.0 normalized in Gene Expression Console 1.0 (Affymetrix)
| | Sample_platform_id | GPL96
| | Sample_contact_name | Frank,A,Middleton
| | Sample_contact_email | middletf@upstate.edu
| | Sample_contact_phone | 315-464-7721
| | Sample_contact_department | Neuroscience and Physiology
| | Sample_contact_institute | SUNY Upstate Medical Univ
| | Sample_contact_address | 750 East Adams St
| | Sample_contact_city | Syracuse
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 13210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM606nnn/GSM606626/suppl/GSM606626.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM606nnn/GSM606626/suppl/GSM606626.CHP.gz
| | Sample_series_id | GSE20292
| | Sample_series_id | GSE20295
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
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