Search results for the GEO ID: GSE20335  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM509574 | GPL1261 |
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Wild-type MEFs, biological rep1
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wildtype MEFs
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cell type: embryonic fibroblasts (MEFs)
genotype: wild type
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Gene expression data in wild-type MEFs
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| Sample_geo_accession | GSM509574
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509574/suppl/GSM509574.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
| | |
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GSM509575 | GPL1261 |
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Wild-type MEFs, biological rep2
|
wildtype MEFs
|
cell type: embryonic fibroblasts (MEFs)
genotype: wild type
|
Gene expression data in wild-type MEFs
|
| Sample_geo_accession | GSM509575
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509575/suppl/GSM509575.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
| | |
|
GSM509576 | GPL1261 |
|
FIH null MEFs, biological rep1
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FIH null MEFs
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cell type: embryonic fibroblasts (MEFs)
genotype: FIH null
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Gene expression data in FIH null MEFs
|
| Sample_geo_accession | GSM509576
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509576/suppl/GSM509576.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
| | |
|
GSM509577 | GPL1261 |
|
FIH null MEFs, biological rep2
|
FIH null MEFs
|
cell type: embryonic fibroblasts (MEFs)
genotype: FIH null
|
Gene expression data in FIH null MEFs
|
| Sample_geo_accession | GSM509577
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509577/suppl/GSM509577.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
| | |
|
GSM509578 | GPL1261 |
|
VHL null MEFs, biological rep1
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VHL null MEFs
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cell type: embryonic fibroblasts (MEFs)
genotype: VHL null
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Gene expression data in VHL null MEFs
|
| Sample_geo_accession | GSM509578
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509578/suppl/GSM509578.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
| | |
|
GSM509579 | GPL1261 |
|
VHL null MEFs, biological rep2
|
VHL null MEFs
|
cell type: embryonic fibroblasts (MEFs)
genotype: VHL null
|
Gene expression data in VHL null MEFs
|
| Sample_geo_accession | GSM509579
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509579/suppl/GSM509579.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
| | |
|
GSM509580 | GPL1261 |
|
VHL/FIH null MEFs, biological rep1
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VHL/FIH null MEFs
|
cell type: embryonic fibroblasts (MEFs)
genotype: VHL/FIH null
|
Gene expression data in VHL/FIH null MEFs
|
| Sample_geo_accession | GSM509580
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509580/suppl/GSM509580.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
| | |
|
GSM509581 | GPL1261 |
|
VHL/FIH null MEFs, biological rep2
|
VHL/FIH null MEFs
|
cell type: embryonic fibroblasts (MEFs)
genotype: VHL/FIH null
|
Gene expression data in VHL/FIH null MEFs
|
| Sample_geo_accession | GSM509581
| | Sample_status | Public on Apr 17 2010
| | Sample_submission_date | Feb 16 2010
| | Sample_last_update_date | Feb 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | MEFs were cultured under normoxia (21% O2) in the standard tissue culture incubator (37C, 5% CO2) with growth medium (high glucose DMEM supplemented with 10% FBS and antibiotics).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | It was performed according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Hybridization was performed in Hybridization Oven 320. GeneChips were washed and stained in the GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Na,,Zhang
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM509nnn/GSM509581/suppl/GSM509581.CEL.gz
| | Sample_series_id | GSE20335
| | Sample_data_row_count | 45101
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