Search results for the GEO ID: GSE20513  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM515350 | GPL1261 |
|
Clock_mutant_liver_bezafibrate-treated_5days rep1
|
Clock_mutant_mouse_liver_treated_with_bezafibrate_for_5_days_rep1
|
genotype/variation: Clk/Clk mutant (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from Clock_mutant_mouse_liver
|
| Sample_geo_accession | GSM515350
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515350/suppl/GSM515350.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515351 | GPL1261 |
|
Clock_mutant_liver_bezafibrate-treated_5days rep2
|
Clock_mutant_mouse_liver_treated_with_bezafibrate_for_5_days_rep2
|
genotype/variation: Clk/Clk mutant (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from Clock_mutant_mouse_liver
|
| Sample_geo_accession | GSM515351
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515351/suppl/GSM515351.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515352 | GPL1261 |
|
Clock_mutant_liver_bezafibrate-treated_5days rep3
|
Clock_mutant_mouse_liver_treated_with_bezafibrate_for_5_days_rep3
|
genotype/variation: Clk/Clk mutant (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from Clock_mutant_mouse_liver
|
| Sample_geo_accession | GSM515352
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515352/suppl/GSM515352.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515353 | GPL1261 |
|
PPARalpha-null_liver_bezafibrate-treated_5days rep1
|
PPARalpha-null_mouse_liver_treated_with_bezafibrate_for_5_days_rep1
|
genotype/variation: PPARalpha-null (crossed 129S4SvJae-PPARalphatm1Gonz/J with Jcl:ICR)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from PPARalpha-null_mouse_liver
|
| Sample_geo_accession | GSM515353
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515353/suppl/GSM515353.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515354 | GPL1261 |
|
PPARalpha-null_liver_bezafibrate-treated_5days rep2
|
PPARalpha-null_mouse_liver_treated_with_bezafibrate_for_5_days_rep2
|
genotype/variation: PPARalpha-null (crossed 129S4SvJae-PPARalphatm1Gonz/J with Jcl:ICR)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from PPARalpha-null_mouse_liver
|
| Sample_geo_accession | GSM515354
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515354/suppl/GSM515354.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515355 | GPL1261 |
|
PPARalpha-null_liver_bezafibrate-treated_5days rep3
|
PPARalpha-null_mouse_liver_treated_with_bezafibrate_for_5_days_rep3
|
genotype/variation: PPARalpha-null (crossed 129S4SvJae-PPARalphatm1Gonz/J with Jcl:ICR)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from PPARalpha-null_mouse_liver
|
| Sample_geo_accession | GSM515355
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515355/suppl/GSM515355.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515356 | GPL1261 |
|
Wild-type_liver_bezafibrate-treated_5days rep1
|
Wild_type_mouse_liver_treated_with_bezafibrate_for_5_days_rep1
|
genotype/variation: wild type (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from Wild_type_mouse_liver_treated_with_bezafibrate
|
| Sample_geo_accession | GSM515356
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515356/suppl/GSM515356.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515357 | GPL1261 |
|
Wild-type_liver_bezafibrate-treated_5days rep2
|
Wild_type_mouse_liver_treated_with_bezafibrate_for_5_days_rep2
|
genotype/variation: wild type (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from Wild_type_mouse_liver_treated_with_bezafibrate
|
| Sample_geo_accession | GSM515357
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515357/suppl/GSM515357.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515358 | GPL1261 |
|
Wild-type_liver_bezafibrate-treated_5days rep3
|
Wild_type_mouse_liver_treated_with_bezafibrate_for_5_days_rep3
|
genotype/variation: wild type (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: bezafibrate
|
Gene expression data from Wild_type_mouse_liver_treated_with_bezafibrate
|
| Sample_geo_accession | GSM515358
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515358/suppl/GSM515358.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515359 | GPL1261 |
|
Wild-type_liver rep1
|
Wild_type_mouse_liver_rep1
|
genotype/variation: wild type (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: control
|
Gene expression data from Wild_type_mouse_liver
|
| Sample_geo_accession | GSM515359
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515359/suppl/GSM515359.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515360 | GPL1261 |
|
Wild-type_liver rep2
|
Wild_type_mouse_liver_rep2
|
genotype/variation: wild type (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: control
|
Gene expression data from Wild_type_mouse_liver
|
| Sample_geo_accession | GSM515360
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515360/suppl/GSM515360.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
| | |
|
GSM515361 | GPL1261 |
|
Wild-type_liver rep3
|
Wild_type_mouse_liver_rep3
|
genotype/variation: wild type (with Jcl:ICR background)
age: 6-12 weeks
gender: male
agent: control
|
Gene expression data from Wild_type_mouse_liver
|
| Sample_geo_accession | GSM515361
| | Sample_status | Public on Jun 15 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (250 ng) was extracted using RNAiso (Takara Bio Inc., Otsu, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were synthesized by GeneChip 3' IVT Express Kit (Affymetrix) from 250ng total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Preprocessing for the probe level data was performed using robust multi-array analysis (RMA) algorithm to obtain expression level data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Katsutaka,,Oishi
| | Sample_contact_email | k-ooishi@aist.go.jp
| | Sample_contact_institute | AIST
| | Sample_contact_address | Tsukuba
| | Sample_contact_city | Ibaraki
| | Sample_contact_zip/postal_code | 305-8566
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515361/suppl/GSM515361.CEL.gz
| | Sample_series_id | GSE20513
| | Sample_data_row_count | 45101
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