Search results for the GEO ID: GSE20519  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM515402 | GPL1261 |
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Leukemia, Immunophenotype mixed lineage leukemia (MLL)
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hematopoietic stem/precursor cells transduced with AF4-MLL and MLL-AF4 that developed leukemia
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disease state: leukemia
cell type: leukemic cells (isolated from bone marrow of diseased mouse)
immunophenotype: mixed lineage leukemia (MLL)
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Gene expression data from leukemic cells with an MLL immmunophenotype
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| Sample_geo_accession | GSM515402
| | Sample_status | Public on Jul 07 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jul 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were not sorted rather than anylzed by FACS fro their immunophenotype; 3 different immunophenotypes were revealed
| | Sample_growth_protocol_ch1 | Bone marrow cells were isolated after several month from moribund mice that developed leukemia
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy mini kit (QIAGEN)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix standard protocol (2 µg RNA)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip MG-430_2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned in a GeneChip Scanner 3000 (G7 update)
| | Sample_data_processing | The data were analyzed with MAS5 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rolf,,Marschalek
| | Sample_contact_email | rolf.marschalek@em.uni-frankfurt.de
| | Sample_contact_phone | 049-69-798-29647
| | Sample_contact_fax | 049-69-798-29647
| | Sample_contact_department | Inst Pharm Biology
| | Sample_contact_institute | Goethe University
| | Sample_contact_address | Max-von-Laue-Str. 9
| | Sample_contact_city | Frankfurt/Main
| | Sample_contact_zip/postal_code | 60438
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515402/suppl/GSM515402.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515402/suppl/GSM515402.CHP.gz
| | Sample_series_id | GSE20519
| | Sample_data_row_count | 45101
| | |
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GSM515403 | GPL1261 |
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Leukemia, Immunphenotype proB ALL
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hematopoietic stem/precursor cells transduced with AF4-MLL that developed leukemia
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disease state: leukemia
cell type: leukemic cells (isolated from bone marrow of diseased mouse)
immunophenotype: proB ALL
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Gene expression data from leukemic cells with a proB ALL immmunophenotype
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| Sample_geo_accession | GSM515403
| | Sample_status | Public on Jul 07 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jul 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were not sorted rather than anylzed by FACS fro their immunophenotype; 3 different immunophenotypes were revealed
| | Sample_growth_protocol_ch1 | Bone marrow cells were isolated after several month from moribund mice that developed leukemia
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy mini kit (QIAGEN)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix standard protocol (2 µg RNA)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip MG-430_2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned in a GeneChip Scanner 3000 (G7 update)
| | Sample_data_processing | The data were analyzed with MAS5 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rolf,,Marschalek
| | Sample_contact_email | rolf.marschalek@em.uni-frankfurt.de
| | Sample_contact_phone | 049-69-798-29647
| | Sample_contact_fax | 049-69-798-29647
| | Sample_contact_department | Inst Pharm Biology
| | Sample_contact_institute | Goethe University
| | Sample_contact_address | Max-von-Laue-Str. 9
| | Sample_contact_city | Frankfurt/Main
| | Sample_contact_zip/postal_code | 60438
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515403/suppl/GSM515403.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515403/suppl/GSM515403.CHP.gz
| | Sample_series_id | GSE20519
| | Sample_data_row_count | 45101
| | |
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GSM515404 | GPL1261 |
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Leukemia, Immunophenotype B/T biphenotypic acute leukemia (B/T BAL)
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hematopoietic stem/precursor cells transduced with AF4-MLL that developed leukemia
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disease state: leukemia
cell type: leukemic cells (isolated from bone marrow of diseased mouse)
immunophenotype: B/T biphenotypic acute leukemia (B/T BAL)
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Gene expression data from leukemic cells with a B/T BAL immmunophenotype
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| Sample_geo_accession | GSM515404
| | Sample_status | Public on Jul 07 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jul 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were not sorted rather than anylzed by FACS fro their immunophenotype; 3 different immunophenotypes were revealed
| | Sample_growth_protocol_ch1 | Bone marrow cells were isolated after several month from moribund mice that developed leukemia
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy mini kit (QIAGEN)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix standard protocol (2 µg RNA)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip MG-430_2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned in a GeneChip Scanner 3000 (G7 update)
| | Sample_data_processing | The data were analyzed with MAS5 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rolf,,Marschalek
| | Sample_contact_email | rolf.marschalek@em.uni-frankfurt.de
| | Sample_contact_phone | 049-69-798-29647
| | Sample_contact_fax | 049-69-798-29647
| | Sample_contact_department | Inst Pharm Biology
| | Sample_contact_institute | Goethe University
| | Sample_contact_address | Max-von-Laue-Str. 9
| | Sample_contact_city | Frankfurt/Main
| | Sample_contact_zip/postal_code | 60438
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515404/suppl/GSM515404.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515404/suppl/GSM515404.CHP.gz
| | Sample_series_id | GSE20519
| | Sample_data_row_count | 45101
| | |
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GSM515405 | GPL1261 |
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normal bone marrow
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normal bone marrow cells (control)
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disease state: control
cell type: bone marrow cells
immunophenotype: normal
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control
|
| Sample_geo_accession | GSM515405
| | Sample_status | Public on Jul 07 2010
| | Sample_submission_date | Feb 24 2010
| | Sample_last_update_date | Jul 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were not sorted rather than anylzed by FACS fro their immunophenotype; 3 different immunophenotypes were revealed
| | Sample_growth_protocol_ch1 | Bone marrow cells were isolated after several month from moribund mice that developed leukemia
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy mini kit (QIAGEN)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix standard protocol (2 µg RNA)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip MG-430_2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned in a GeneChip Scanner 3000 (G7 update)
| | Sample_data_processing | The data were analyzed with MAS5 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Rolf,,Marschalek
| | Sample_contact_email | rolf.marschalek@em.uni-frankfurt.de
| | Sample_contact_phone | 049-69-798-29647
| | Sample_contact_fax | 049-69-798-29647
| | Sample_contact_department | Inst Pharm Biology
| | Sample_contact_institute | Goethe University
| | Sample_contact_address | Max-von-Laue-Str. 9
| | Sample_contact_city | Frankfurt/Main
| | Sample_contact_zip/postal_code | 60438
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515405/suppl/GSM515405.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM515nnn/GSM515405/suppl/GSM515405.CHP.gz
| | Sample_series_id | GSE20519
| | Sample_data_row_count | 45101
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