Search results for the GEO ID: GSE20576  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM516945 | GPL8759 |
|
ESC-1
|
ESC, clone 1
|
origin: KH2 ESC, targeted
cell type: embryonic stem cell
|
ESC-1
|
| Sample_geo_accession | GSM516945
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516945/suppl/GSM516945.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516946 | GPL8759 |
|
ESC-2
|
ESC, clone 2
|
origin: KH2 ESC, targeted
cell type: embryonic stem cell
|
ESC-2
|
| Sample_geo_accession | GSM516946
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516946/suppl/GSM516946.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516947 | GPL8759 |
|
ESC-3
|
ESC, clone 3
|
origin: KH2 ESC, targeted
cell type: embryonic stem cell
|
ESC-3
|
| Sample_geo_accession | GSM516947
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516947/suppl/GSM516947.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516948 | GPL8759 |
|
ESC-4
|
ESC, clone 4
|
origin: KH2 ESC, targeted
cell type: embryonic stem cell
|
ESC-4
|
| Sample_geo_accession | GSM516948
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516948/suppl/GSM516948.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516949 | GPL8759 |
|
iPSC-1
|
iPSC, clone 1
|
origin: MEFs, chimera 1
cell type: induced pluripotent stem cell
|
iPSC-1
|
| Sample_geo_accession | GSM516949
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516949/suppl/GSM516949.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516950 | GPL8759 |
|
iPSC-2
|
iPSC, clone 2
|
origin: MEFs, chimera 1
cell type: induced pluripotent stem cell
|
iPSC-2
|
| Sample_geo_accession | GSM516950
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516950/suppl/GSM516950.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516951 | GPL8759 |
|
iPSC-3
|
iPSC, clone 3
|
origin: MEFs, chimera 1
cell type: induced pluripotent stem cell
|
iPSC-3
|
| Sample_geo_accession | GSM516951
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516951/suppl/GSM516951.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516952 | GPL8759 |
|
iPSC-4
|
iPSC, clone 4
|
origin: MEFs, chimera 1
cell type: induced pluripotent stem cell
|
iPSC-4
|
| Sample_geo_accession | GSM516952
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516952/suppl/GSM516952.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516953 | GPL8759 |
|
iPSC-5
|
iPSC, clone 5
|
origin: MEFs, chimera 1
cell type: induced pluripotent stem cell
|
iPSC-5
|
| Sample_geo_accession | GSM516953
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516953/suppl/GSM516953.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516954 | GPL8759 |
|
iPSC-6
|
iPSC, clone 6
|
origin: MEFs, chimera 1
cell type: induced pluripotent stem cell
|
iPSC-6
|
| Sample_geo_accession | GSM516954
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516954/suppl/GSM516954.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516955 | GPL8759 |
|
iPSC-7
|
iPSC, clone 7
|
origin: HSCs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-7
|
| Sample_geo_accession | GSM516955
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516955/suppl/GSM516955.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516956 | GPL8759 |
|
iPSC-8
|
iPSC, clone 8
|
origin: HSCs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-8
|
| Sample_geo_accession | GSM516956
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516956/suppl/GSM516956.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516957 | GPL8759 |
|
iPSC-9
|
iPSC, clone 9
|
origin: HSCs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-9
|
| Sample_geo_accession | GSM516957
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516957/suppl/GSM516957.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516958 | GPL8759 |
|
iPSC-10
|
iPSC, clone 10
|
origin: HSCs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-10
|
| Sample_geo_accession | GSM516958
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516958/suppl/GSM516958.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516959 | GPL8759 |
|
iPSC-11
|
iPSC, clone 11
|
origin: GMPs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-11
|
| Sample_geo_accession | GSM516959
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516959/suppl/GSM516959.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516960 | GPL8759 |
|
iPSC-12
|
iPSC, clone 12
|
origin: GMPs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-12
|
| Sample_geo_accession | GSM516960
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516960/suppl/GSM516960.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516961 | GPL8759 |
|
iPSC-13
|
iPSC, clone 13
|
origin: GMPs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-13
|
| Sample_geo_accession | GSM516961
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516961/suppl/GSM516961.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516962 | GPL8759 |
|
iPSC-14
|
iPSC, clone 14
|
origin: GMPs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-14
|
| Sample_geo_accession | GSM516962
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516962/suppl/GSM516962.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516963 | GPL8759 |
|
iPSC-15
|
iPSC, clone 15
|
origin: Granulocytes, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-15
|
| Sample_geo_accession | GSM516963
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516963/suppl/GSM516963.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516964 | GPL8759 |
|
iPSC-16
|
iPSC, clone 16
|
origin: Granulocytes, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-16
|
| Sample_geo_accession | GSM516964
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516964/suppl/GSM516964.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516965 | GPL8759 |
|
iPSC-17
|
iPSC, clone 17
|
origin: Granulocytes, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-17
|
| Sample_geo_accession | GSM516965
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516965/suppl/GSM516965.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516966 | GPL8759 |
|
iPSC-19
|
iPSC, clone 19
|
origin: PFs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-19
|
| Sample_geo_accession | GSM516966
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516966/suppl/GSM516966.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516967 | GPL8759 |
|
iPSC-20
|
iPSC, clone 20
|
origin: PFs, mouse 1
cell type: induced pluripotent stem cell
|
iPSC-20
|
| Sample_geo_accession | GSM516967
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516967/suppl/GSM516967.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516968 | GPL8759 |
|
iPSC-21
|
iPSC, clone 21
|
origin: HSCs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-21
|
| Sample_geo_accession | GSM516968
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516968/suppl/GSM516968.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516969 | GPL8759 |
|
iPSC-22
|
iPSC, clone 22
|
origin: HSCs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-22
|
| Sample_geo_accession | GSM516969
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516969/suppl/GSM516969.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516970 | GPL8759 |
|
iPSC-23
|
iPSC, clone 23
|
origin: HSCs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-23
|
| Sample_geo_accession | GSM516970
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516970/suppl/GSM516970.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516971 | GPL8759 |
|
iPSC-24
|
iPSC, clone 24
|
origin: HSCs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-24
|
| Sample_geo_accession | GSM516971
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516971/suppl/GSM516971.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516972 | GPL8759 |
|
iPSC-25
|
iPSC, clone 25
|
origin: GMPs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-25
|
| Sample_geo_accession | GSM516972
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516972/suppl/GSM516972.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516973 | GPL8759 |
|
iPSC-26
|
iPSC, clone 26
|
origin: GMPs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-26
|
| Sample_geo_accession | GSM516973
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516973/suppl/GSM516973.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516974 | GPL8759 |
|
iPSC-27
|
iPSC, clone 27
|
origin: GMPs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-27
|
| Sample_geo_accession | GSM516974
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516974/suppl/GSM516974.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516975 | GPL8759 |
|
iPSC-28
|
iPSC, clone 28
|
origin: GMPs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-28
|
| Sample_geo_accession | GSM516975
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516975/suppl/GSM516975.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516976 | GPL8759 |
|
iPSC-29
|
iPSC, clone 29
|
origin: Granulocytes, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-29
|
| Sample_geo_accession | GSM516976
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516976/suppl/GSM516976.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516977 | GPL8759 |
|
iPSC-30
|
iPSC, clone 30
|
origin: Granulocytes, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-30
|
| Sample_geo_accession | GSM516977
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516977/suppl/GSM516977.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516978 | GPL8759 |
|
iPSC-31
|
iPSC, clone 31
|
origin: Granulocytes, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-31
|
| Sample_geo_accession | GSM516978
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516978/suppl/GSM516978.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516979 | GPL8759 |
|
iPSC-32
|
iPSC, clone 32
|
origin: PFs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-32
|
| Sample_geo_accession | GSM516979
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516979/suppl/GSM516979.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516980 | GPL8759 |
|
iPSC-33
|
iPSC, clone 33
|
origin: PFs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-33
|
| Sample_geo_accession | GSM516980
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516980/suppl/GSM516980.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516981 | GPL8759 |
|
iPSC-34
|
iPSC, clone 34
|
origin: PFs, mouse 2
cell type: induced pluripotent stem cell
|
iPSC-34
|
| Sample_geo_accession | GSM516981
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516981/suppl/GSM516981.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516982 | GPL8759 |
|
iPSC-35
|
iPSC, clone 35
|
origin: HSCs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-35
|
| Sample_geo_accession | GSM516982
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516982/suppl/GSM516982.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516983 | GPL8759 |
|
iPSC-36
|
iPSC, clone 36
|
origin: HSCs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-36
|
| Sample_geo_accession | GSM516983
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516983/suppl/GSM516983.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516984 | GPL8759 |
|
iPSC-37
|
iPSC, clone 37
|
origin: HSCs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-37
|
| Sample_geo_accession | GSM516984
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516984/suppl/GSM516984.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516985 | GPL8759 |
|
iPSC-38
|
iPSC, clone 38
|
origin: GMPs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-38
|
| Sample_geo_accession | GSM516985
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516985/suppl/GSM516985.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516986 | GPL8759 |
|
iPSC-39
|
iPSC, clone 39
|
origin: GMPs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-39
|
| Sample_geo_accession | GSM516986
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516986/suppl/GSM516986.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516987 | GPL8759 |
|
iPSC-40
|
iPSC, clone 40
|
origin: GMPs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-40
|
| Sample_geo_accession | GSM516987
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516987/suppl/GSM516987.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516988 | GPL8759 |
|
iPSC-41
|
iPSC, clone 41
|
origin: Granulocytes, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-41
|
| Sample_geo_accession | GSM516988
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516988/suppl/GSM516988.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516989 | GPL8759 |
|
iPSC-42
|
iPSC, clone 42
|
origin: Granulocytes, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-42
|
| Sample_geo_accession | GSM516989
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516989/suppl/GSM516989.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516990 | GPL8759 |
|
iPSC-43
|
iPSC, clone 43
|
origin: Granulocytes, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-43
|
| Sample_geo_accession | GSM516990
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516990/suppl/GSM516990.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516991 | GPL8759 |
|
iPSC-44
|
iPSC, clone 44
|
origin: TTFs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-44
|
| Sample_geo_accession | GSM516991
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516991/suppl/GSM516991.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516992 | GPL8759 |
|
iPSC-45
|
iPSC, clone 45
|
origin: TTFs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-45
|
| Sample_geo_accession | GSM516992
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516992/suppl/GSM516992.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516993 | GPL8759 |
|
iPSC-46
|
iPSC, clone 46
|
origin: TTFs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-46
|
| Sample_geo_accession | GSM516993
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516993/suppl/GSM516993.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516994 | GPL8759 |
|
iPSC-47
|
iPSC, clone 47
|
origin: TTFs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-47
|
| Sample_geo_accession | GSM516994
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516994/suppl/GSM516994.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516995 | GPL8759 |
|
iPSC-48
|
iPSC, clone 48
|
origin: TTFs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-48
|
| Sample_geo_accession | GSM516995
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516995/suppl/GSM516995.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516996 | GPL8759 |
|
iPSC-49
|
iPSC, clone 49
|
origin: TTFs, chimera 2
cell type: induced pluripotent stem cell
|
iPSC-49
|
| Sample_geo_accession | GSM516996
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516996/suppl/GSM516996.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516997 | GPL8759 |
|
Adeno-2
|
Adeno-iPSC, clone 2
|
origin: fetal liver
cell type: induced pluripotent stem cell
|
Adeno-2
|
| Sample_geo_accession | GSM516997
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516997/suppl/GSM516997.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516998 | GPL8759 |
|
NT-4
|
NT-ESC from Adeno-2, subclone 1
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-4
|
| Sample_geo_accession | GSM516998
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516998/suppl/GSM516998.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM516999 | GPL8759 |
|
NT-5
|
NT-ESC from Adeno-2, subclone 2
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-5
|
| Sample_geo_accession | GSM516999
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM516nnn/GSM516999/suppl/GSM516999.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM517000 | GPL8759 |
|
NT-6
|
NT-ESC from Adeno-2, subclone 3
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-6
|
| Sample_geo_accession | GSM517000
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517000/suppl/GSM517000.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM517001 | GPL8759 |
|
NT-7
|
NT-ESC from iPSC-7, subclone 1
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-7
|
| Sample_geo_accession | GSM517001
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517001/suppl/GSM517001.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM517002 | GPL8759 |
|
NT-8
|
NT-ESC from iPSC-15, subclone 1
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-8
|
| Sample_geo_accession | GSM517002
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517002/suppl/GSM517002.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM517003 | GPL8759 |
|
NT-9
|
NT-ESC from iPSC-15, subclone 2
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-9
|
| Sample_geo_accession | GSM517003
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip HT IVT Labeling Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was cleaned up, fragmented and hybridized to GeneChip HT Array Plates (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip H Scanner (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL8759
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517003/suppl/GSM517003.CEL.gz
| | Sample_series_id | GSE20572
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 22626
| | |
|
GSM517041 | GPL1261 |
|
Adeno-1
|
Adeno-iPSC, clone 1
|
origin: tail-tip fibroblasts (TTFs)
cell type: induced pluripotent stem cell
|
Adeno-1
|
| Sample_geo_accession | GSM517041
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to Affymetrix Mouse Genome 430 2.0 arrays using the GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517041/suppl/GSM517041.CEL.gz
| | Sample_series_id | GSE20575
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 45101
| | |
|
GSM517042 | GPL1261 |
|
NT-1
|
NT-ESC from Adeno-1, subclone 1
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-1
|
| Sample_geo_accession | GSM517042
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to Affymetrix Mouse Genome 430 2.0 arrays using the GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517042/suppl/GSM517042.CEL.gz
| | Sample_series_id | GSE20575
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 45101
| | |
|
GSM517043 | GPL1261 |
|
NT-2
|
NT-ESC from Adeno-1, subclone 2
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-2
|
| Sample_geo_accession | GSM517043
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to Affymetrix Mouse Genome 430 2.0 arrays using the GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517043/suppl/GSM517043.CEL.gz
| | Sample_series_id | GSE20575
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 45101
| | |
|
GSM517044 | GPL1261 |
|
NT-3
|
NT-ESC from Adeno-1, subclone 3
|
origin: cloned blastocyst
cell type: embryonic stem cell
|
NT-3
|
| Sample_geo_accession | GSM517044
| | Sample_status | Public on Apr 27 2010
| | Sample_submission_date | Mar 01 2010
| | Sample_last_update_date | Apr 27 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were trypsinized and preplated for 45 minutes to remove MEFs.
| | Sample_growth_protocol_ch1 | All cells were cultured in standard ESC media (15% FBS, LIF) on irradiated MEFs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the QIAGEN miRNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA using the GeneChip IVT Express Kit (Affymetrix).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to Affymetrix Mouse Genome 430 2.0 arrays using the GeneChip Hybridization, Wash and Stain Kit (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Normalization of the array data was done using the "mean normalize" function in GeneSifter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthias,,Stadtfeld
| | Sample_contact_email | mstadtfeld@partners.org
| | Sample_contact_institute | MGH
| | Sample_contact_address | 185 Cambridge Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517044/suppl/GSM517044.CEL.gz
| | Sample_series_id | GSE20575
| | Sample_series_id | GSE20576
| | Sample_data_row_count | 45101
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