Search results for the GEO ID: GSE20577 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM517045 | GPL1261 |
|
4 week liver, untreated, biological replicate 1
|
4 week old C57BL/6 mice, control
|
tissue: liver
genotype: C57BL/6
|
Gene expression data from 4 week old mice liver, control.
|
Sample_geo_accession | GSM517045
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517045/suppl/GSM517045_Liver_none_4w-r1.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517046 | GPL1261 |
|
4 week liver, untreated, biological replicate 2
|
4 week old C57BL/6 mice, control
|
tissue: liver
genotype: C57BL/6
|
Gene expression data from 4 week old mice liver, control.
|
Sample_geo_accession | GSM517046
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517046/suppl/GSM517046_Liver_none_4w-r2.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517047 | GPL1261 |
|
4 week liver, untreated, biological replicate 3
|
4 week old C57BL/6 mice, control
|
tissue: liver
genotype: C57BL/6
|
Gene expression data from 4 week old mice liver, control.
|
Sample_geo_accession | GSM517047
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517047/suppl/GSM517047_Liver_none_4w-r3.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517048 | GPL1261 |
|
4 week liver, in utero taurine supplementation, biological replicate 1
|
4 week old C57BL/6 mice, in utero taurine supplemented
|
tissue: liver
genotype: C57BL/6
|
Gene expression data from 4 week old mice liver, gestational taurine supplementation
|
Sample_geo_accession | GSM517048
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517048/suppl/GSM517048_Liver_taurine_4w-r1.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517049 | GPL1261 |
|
4 week liver, in utero taurine supplementation, biological replicate 2
|
4 week old C57BL/6 mice, in utero taurine supplemented
|
tissue: liver
genotype: C57BL/6
|
Gene expression data from 4 week old mice liver, gestational taurine supplementation
|
Sample_geo_accession | GSM517049
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517049/suppl/GSM517049_Liver_taurine_4w-r2.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517050 | GPL1261 |
|
4 week liver, in utero taurine supplementation, biological replicate 3
|
4 week old C57BL/6 mice, in utero taurine supplemented
|
tissue: liver
genotype: C57BL/6
|
Gene expression data from 4 week old mice liver, gestational taurine supplementation
|
Sample_geo_accession | GSM517050
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517050/suppl/GSM517050_Liver_taurine_4w-r3.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517051 | GPL1261 |
|
4 week skeletal muscle, untreated, biological replicate 1
|
4 week old C57BL/6 mice, control
|
tissue: quadriceps muscle
genotype: C57BL/6
|
Gene expression data from 4 week old mice muscle, control.
|
Sample_geo_accession | GSM517051
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517051/suppl/GSM517051_Muscle_none_4w-r1.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517052 | GPL1261 |
|
4 week skeletal muscle, untreated, biological replicate 2
|
4 week old C57BL/6 mice, control
|
tissue: quadriceps muscle
genotype: C57BL/6
|
Gene expression data from 4 week old mice muscle, control.
|
Sample_geo_accession | GSM517052
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517052/suppl/GSM517052_Muscle_none_4w-r2.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517053 | GPL1261 |
|
4 week skeletal muscle, untreated, biological replicate 3
|
4 week old C57BL/6 mice, control
|
tissue: quadriceps muscle
genotype: C57BL/6
|
Gene expression data from 4 week old mice muscle, control.
|
Sample_geo_accession | GSM517053
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517053/suppl/GSM517053_Muscle_none_4w-r3.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517054 | GPL1261 |
|
4 week skeletal muscle, in utero taurine supplementation, biological replicate 1
|
4 week old C57BL/6 mice, in utero taurine supplemented
|
tissue: quadriceps muscle
genotype: C57BL/6
|
Gene expression data from 4 week old mice muscle, gestational taurine supplementation
|
Sample_geo_accession | GSM517054
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517054/suppl/GSM517054_Muscle_taurine_4w-r1.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517055 | GPL1261 |
|
4 week skeletal muscle, in utero taurine supplementation, biological replicate 2
|
4 week old C57BL/6 mice, in utero taurine supplemented
|
tissue: quadriceps muscle
genotype: C57BL/6
|
Gene expression data from 4 week old mice muscle, gestational taurine supplementation
|
Sample_geo_accession | GSM517055
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517055/suppl/GSM517055_Muscle_taurine_4w-r2.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
GSM517056 | GPL1261 |
|
4 week skeletal muscle, in utero taurine supplementation, biological replicate 3
|
4 week old C57BL/6 mice, in utero taurine supplemented
|
tissue: quadriceps muscle
genotype: C57BL/6
|
Gene expression data from 4 week old mice muscle, gestational taurine supplementation
|
Sample_geo_accession | GSM517056
| Sample_status | Public on Dec 01 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Mar 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Pregnant dams recieved either water or 1% taurine in water from day 1 of pregnancy. Offspring was killed and tissue taken out at 4 weeks.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from muscle and liver tissue using Trizol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA labelling was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_hyb_protocol | Hybridization was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_scan_protocol | Scanning was done according to the manufacturer's (Affymetrix Inc., Santa Clara, CA, USA) instructions
| Sample_data_processing | The data were analyzed using R and Bioconductor using justRMA with default settings
| Sample_platform_id | GPL1261
| Sample_contact_name | Ole,Hartvig,Mortensen
| Sample_contact_email | ole@hartvig.org
| Sample_contact_laboratory | Cellular and Metabolic Research Section
| Sample_contact_department | Department of Biomedical Sciences
| Sample_contact_institute | University of Copenhagen
| Sample_contact_address | Panum 6.5.8, Blegdamsvej 3
| Sample_contact_city | Copenhagen N
| Sample_contact_zip/postal_code | 2200
| Sample_contact_country | Denmark
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517056/suppl/GSM517056_Muscle_taurine_4w-r3.CEL.gz
| Sample_series_id | GSE20577
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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