Search results for the GEO ID: GSE20578 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM517057 | GPL570 |
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HF-23896-(1), Affymetrix HG-U133 plus 2.0 array
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HF-23896-(1)
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organ: Lung Cancer
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none
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Sample_geo_accession | GSM517057
| Sample_status | Public on May 27 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Jul 11 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen AllPrep extraction kit was used according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 3 ug of total RNA was converted to double-stranded cDNA using Invitrogen's SuperScript Choice kit. cDNA was purified using Affymterix Sample Cleanup Module kit and used to generate biotin labeled cRNA with Enzo in vitro transcription kit. The labeled cRNA was purified using Affymetrix Sample Cleanup Module kit.
| Sample_hyb_protocol | 10 ug of labeled cRNA was fragmented and hybridized to the arrays following manufacturer's protocol (Affymterix).
| Sample_scan_protocol | Affymetrix user manual (GeneChip scanner 3000)
| Sample_data_processing | Raw data were processed with the MAS5.0 method to obtain normalized probe set summaries. Values for each sample were scaled to mean, trimmed 2%, of 500.
| Sample_platform_id | GPL570
| Sample_contact_name | Peter,,Haverty
| Sample_contact_email | phaverty@gene.com
| Sample_contact_department | Bioinformatics
| Sample_contact_institute | Genentech, Inc.
| Sample_contact_address | 1 DNA Way
| Sample_contact_city | South San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94080
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517057/suppl/GSM517057.CEL.gz
| Sample_series_id | GSE20578
| Sample_series_id | GSE20585
| Sample_data_row_count | 54675
| |
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GSM517058 | GPL570 |
|
HF-23897-(1), Affymetrix HG-U133 plus 2.0 array
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HF-23897-(1)
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organ: Adjacent Normal
|
none
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Sample_geo_accession | GSM517058
| Sample_status | Public on May 27 2010
| Sample_submission_date | Mar 01 2010
| Sample_last_update_date | Jul 11 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen AllPrep extraction kit was used according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 3 ug of total RNA was converted to double-stranded cDNA using Invitrogen's SuperScript Choice kit. cDNA was purified using Affymterix Sample Cleanup Module kit and used to generate biotin labeled cRNA with Enzo in vitro transcription kit. The labeled cRNA was purified using Affymetrix Sample Cleanup Module kit.
| Sample_hyb_protocol | 10 ug of labeled cRNA was fragmented and hybridized to the arrays following manufacturer's protocol (Affymterix).
| Sample_scan_protocol | Affymetrix user manual (GeneChip scanner 3000)
| Sample_data_processing | Raw data were processed with the MAS5.0 method to obtain normalized probe set summaries. Values for each sample were scaled to mean, trimmed 2%, of 500.
| Sample_platform_id | GPL570
| Sample_contact_name | Peter,,Haverty
| Sample_contact_email | phaverty@gene.com
| Sample_contact_department | Bioinformatics
| Sample_contact_institute | Genentech, Inc.
| Sample_contact_address | 1 DNA Way
| Sample_contact_city | South San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94080
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM517nnn/GSM517058/suppl/GSM517058.CEL.gz
| Sample_series_id | GSE20578
| Sample_series_id | GSE20585
| Sample_data_row_count | 54675
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