Search results for the GEO ID: GSE20696  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM519579 | GPL1261 |
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3T3-L1_t1_rep1
|
3T3-L1 pre-adipocyte, day -2, replicate 1
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cell type: 3T3-L1 pre-adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519579
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519579/suppl/GSM519579.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
|
GSM519580 | GPL1261 |
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3T3-L1_t1_rep2
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3T3-L1 pre-adipocyte, day -2, replicate 2
|
cell type: 3T3-L1 pre-adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519580
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519580/suppl/GSM519580.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
|
GSM519581 | GPL1261 |
|
3T3-L1_t2_rep1
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3T3-L1 pre-adipocyte, day 0, replicate 1
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cell type: 3T3-L1 pre-adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519581
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519581/suppl/GSM519581.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
|
GSM519582 | GPL1261 |
|
3T3-L1_t2_rep2
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3T3-L1 pre-adipocyte, day 0, replicate 2
|
cell type: 3T3-L1 pre-adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519582
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519582/suppl/GSM519582.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
|
GSM519583 | GPL1261 |
|
3T3-L1_t3_rep1
|
3T3-L1 adipocyte, day 2, replicate 1
|
cell type: 3T3-L1 adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519583
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519583/suppl/GSM519583.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
|
GSM519584 | GPL1261 |
|
3T3-L1_t3_rep2
|
3T3-L1 adipocyte, day 2, replicate 2
|
cell type: 3T3-L1 adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519584
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519584/suppl/GSM519584.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
|
GSM519585 | GPL1261 |
|
3T3-L1_t4_rep1
|
3T3-L1 adipocyte, day 7, replicate 1
|
cell type: 3T3-L1 adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519585
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519585/suppl/GSM519585.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
|
GSM519586 | GPL1261 |
|
3T3-L1_t4_rep2
|
3T3-L1 adipocyte, day 7, replicate 2
|
cell type: 3T3-L1 adipocyte
|
no additional information
|
| Sample_geo_accession | GSM519586
| | Sample_status | Public on Sep 30 2010
| | Sample_submission_date | Mar 09 2010
| | Sample_last_update_date | Sep 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | 3T3-L1 pre-adipocytes were maintained in DMEM supplemented with 10% calf serum. Two days after confluence, the cells were induced with DMEM supplemented with 10% FBS, 1uM dexamethasone, 1.7uM insulin, and 0.5mM 3-isobutyl-1-methylxanthine (IBMX). 48h later, the medium was replaced with DMEM supplemented with 10% FBS and the cells were fed every two days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted using TRIzol (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by Affymetrix from 1 ug total RNA/sample
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As recommended by Affymetrix
| | Sample_data_processing | The data were extracted and RMA normalized using GenePattern (http://genepattern.broadinstitute.org)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tarjei,S,Mikkelsen
| | Sample_contact_institute | Broad Institute
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM519nnn/GSM519586/suppl/GSM519586.CEL.gz
| | Sample_series_id | GSE20696
| | Sample_series_id | GSE20752
| | Sample_data_row_count | 45101
| | |
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