Search results for the GEO ID: GSE20918 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM523409 | GPL1261 |
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jsd_testis_rep1
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testis from jsd mice
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tissue: testis
genotype: jsd
age: 12 weeks
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gene expression data
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Sample_geo_accession | GSM523409
| Sample_status | Public on Sep 06 2010
| Sample_submission_date | Mar 16 2010
| Sample_last_update_date | Sep 06 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Zhilin,,Liu
| Sample_contact_email | zhilinl@bcm.tmc.edu
| Sample_contact_phone | 7137986259
| Sample_contact_laboratory | Dr. JoAnne S. Richards
| Sample_contact_department | Molecular and Cellular Biology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM523nnn/GSM523409/suppl/GSM523409.CEL.gz
| Sample_series_id | GSE20918
| Sample_data_row_count | 45101
| |
|
GSM523410 | GPL1261 |
|
jsd_testis_rep2
|
testis from jsd mice
|
tissue: testis
genotype: jsd
age: 12 weeks
|
gene expression data
|
Sample_geo_accession | GSM523410
| Sample_status | Public on Sep 06 2010
| Sample_submission_date | Mar 16 2010
| Sample_last_update_date | Sep 06 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Zhilin,,Liu
| Sample_contact_email | zhilinl@bcm.tmc.edu
| Sample_contact_phone | 7137986259
| Sample_contact_laboratory | Dr. JoAnne S. Richards
| Sample_contact_department | Molecular and Cellular Biology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM523nnn/GSM523410/suppl/GSM523410.CEL.gz
| Sample_series_id | GSE20918
| Sample_data_row_count | 45101
| |
|
GSM523411 | GPL1261 |
|
jsd_testis_rep3
|
testis from jsd mice
|
tissue: testis
genotype: jsd
age: 12 weeks
|
gene expression data
|
Sample_geo_accession | GSM523411
| Sample_status | Public on Sep 06 2010
| Sample_submission_date | Mar 16 2010
| Sample_last_update_date | Sep 06 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Zhilin,,Liu
| Sample_contact_email | zhilinl@bcm.tmc.edu
| Sample_contact_phone | 7137986259
| Sample_contact_laboratory | Dr. JoAnne S. Richards
| Sample_contact_department | Molecular and Cellular Biology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM523nnn/GSM523411/suppl/GSM523411.CEL.gz
| Sample_series_id | GSE20918
| Sample_data_row_count | 45101
| |
|
GSM523412 | GPL1261 |
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SCARKO-jsd_testis_rep1
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testis from SCARCO-jsd mice
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tissue: testis
genotype: SCARO-jsd
age: 12 weeks
|
gene expression data
|
Sample_geo_accession | GSM523412
| Sample_status | Public on Sep 06 2010
| Sample_submission_date | Mar 16 2010
| Sample_last_update_date | Sep 06 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Zhilin,,Liu
| Sample_contact_email | zhilinl@bcm.tmc.edu
| Sample_contact_phone | 7137986259
| Sample_contact_laboratory | Dr. JoAnne S. Richards
| Sample_contact_department | Molecular and Cellular Biology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM523nnn/GSM523412/suppl/GSM523412.CEL.gz
| Sample_series_id | GSE20918
| Sample_data_row_count | 45101
| |
|
GSM523413 | GPL1261 |
|
SCARKO-jsd_testis_rep2
|
testis from SCARCO-jsd mice
|
tissue: testis
genotype: SCARO-jsd
age: 12 weeks
|
gene expression data
|
Sample_geo_accession | GSM523413
| Sample_status | Public on Sep 06 2010
| Sample_submission_date | Mar 16 2010
| Sample_last_update_date | Sep 06 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Zhilin,,Liu
| Sample_contact_email | zhilinl@bcm.tmc.edu
| Sample_contact_phone | 7137986259
| Sample_contact_laboratory | Dr. JoAnne S. Richards
| Sample_contact_department | Molecular and Cellular Biology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM523nnn/GSM523413/suppl/GSM523413.CEL.gz
| Sample_series_id | GSE20918
| Sample_data_row_count | 45101
| |
|
GSM523414 | GPL1261 |
|
SCARKO-jsd_testis_rep3
|
testis from SCARCO-jsd mice
|
tissue: testis
genotype: SCARO-jsd
age: 12 weeks
|
gene expression data
|
Sample_geo_accession | GSM523414
| Sample_status | Public on Sep 06 2010
| Sample_submission_date | Mar 16 2010
| Sample_last_update_date | Sep 06 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| Sample_platform_id | GPL1261
| Sample_contact_name | Zhilin,,Liu
| Sample_contact_email | zhilinl@bcm.tmc.edu
| Sample_contact_phone | 7137986259
| Sample_contact_laboratory | Dr. JoAnne S. Richards
| Sample_contact_department | Molecular and Cellular Biology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM523nnn/GSM523414/suppl/GSM523414.CEL.gz
| Sample_series_id | GSE20918
| Sample_data_row_count | 45101
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