Search results for the GEO ID: GSE21041  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM525471 | GPL1261 |
|
WT_497
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Ter119+/CD71+/FSC-high WT BM cells
|
cell type: primary bone marrow cell
mirna construct: mir 497
genotype/variation: wild type
|
Gene expression data from wide type primary Ter119+/CD71+/FSC-high bone marrow cells
|
| Sample_geo_accession | GSM525471
| | Sample_status | Public on Jul 15 2010
| | Sample_submission_date | Mar 24 2010
| | Sample_last_update_date | Jul 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary cells were stained with Ter119 and CD71 antibodies and double positive cells with large cell size (FSC high) were sorted directly to Trizol LS reagent for total RNA extraction.
| | Sample_growth_protocol_ch1 | Bone marrow cells were freshly isolated from mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to the manufacture's instruction from Invitrogen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_hyb_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_scan_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_data_processing | Raw array data was processed by the R/Bioconductor implementation of Robust Multi-chip Average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Duonan,,Yu
| | Sample_contact_email | yud@email.chop.edu
| | Sample_contact_phone | 215-590-0968
| | Sample_contact_department | hematology
| | Sample_contact_institute | The children's hospital of philadelphia
| | Sample_contact_address | 3615 Civic center Blvd, ARC Rm315F
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | PA 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM525nnn/GSM525471/suppl/GSM525471.CEL.gz
| | Sample_series_id | GSE21041
| | Sample_data_row_count | 45101
| | |
|
GSM525472 | GPL1261 |
|
WT_504
|
Ter119+/CD71+/FSC-high WT BM cells
|
cell type: primary bone marrow cell
mirna construct: mir 504
genotype/variation: wild type
|
Gene expression data from wide type primary Ter119+/CD71+/FSC-high bone marrow cells
|
| Sample_geo_accession | GSM525472
| | Sample_status | Public on Jul 15 2010
| | Sample_submission_date | Mar 24 2010
| | Sample_last_update_date | Jul 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary cells were stained with Ter119 and CD71 antibodies and double positive cells with large cell size (FSC high) were sorted directly to Trizol LS reagent for total RNA extraction.
| | Sample_growth_protocol_ch1 | Bone marrow cells were freshly isolated from mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to the manufacture's instruction from Invitrogen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_hyb_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_scan_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_data_processing | Raw array data was processed by the R/Bioconductor implementation of Robust Multi-chip Average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Duonan,,Yu
| | Sample_contact_email | yud@email.chop.edu
| | Sample_contact_phone | 215-590-0968
| | Sample_contact_department | hematology
| | Sample_contact_institute | The children's hospital of philadelphia
| | Sample_contact_address | 3615 Civic center Blvd, ARC Rm315F
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | PA 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM525nnn/GSM525472/suppl/GSM525472.CEL.gz
| | Sample_series_id | GSE21041
| | Sample_data_row_count | 45101
| | |
|
GSM525473 | GPL1261 |
|
WT_550
|
Ter119+/CD71+/FSC-high WT BM cells
|
cell type: primary bone marrow cell
mirna construct: mir 550
genotype/variation: wild type
|
Gene expression data from wide type primary Ter119+/CD71+/FSC-high bone marrow cells
|
| Sample_geo_accession | GSM525473
| | Sample_status | Public on Jul 15 2010
| | Sample_submission_date | Mar 24 2010
| | Sample_last_update_date | Jul 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary cells were stained with Ter119 and CD71 antibodies and double positive cells with large cell size (FSC high) were sorted directly to Trizol LS reagent for total RNA extraction.
| | Sample_growth_protocol_ch1 | Bone marrow cells were freshly isolated from mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to the manufacture's instruction from Invitrogen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_hyb_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_scan_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_data_processing | Raw array data was processed by the R/Bioconductor implementation of Robust Multi-chip Average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Duonan,,Yu
| | Sample_contact_email | yud@email.chop.edu
| | Sample_contact_phone | 215-590-0968
| | Sample_contact_department | hematology
| | Sample_contact_institute | The children's hospital of philadelphia
| | Sample_contact_address | 3615 Civic center Blvd, ARC Rm315F
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | PA 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM525nnn/GSM525473/suppl/GSM525473.CEL.gz
| | Sample_series_id | GSE21041
| | Sample_data_row_count | 45101
| | |
|
GSM525474 | GPL1261 |
|
KO_493
|
Ter119+/CD71+/FSC-high miR-144/451-null BM cells
|
cell type: primary bone marrow cell
mirna construct: mir 493
genotype/variation: miR-144/451 knockout
|
Gene expression data from miR-144/451-null primary Ter119+/CD71+/FSC-high bone marrow cells
|
| Sample_geo_accession | GSM525474
| | Sample_status | Public on Jul 15 2010
| | Sample_submission_date | Mar 24 2010
| | Sample_last_update_date | Jul 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary cells were stained with Ter119 and CD71 antibodies and double positive cells with large cell size (FSC high) were sorted directly to Trizol LS reagent for total RNA extraction.
| | Sample_growth_protocol_ch1 | Bone marrow cells were freshly isolated from mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to the manufacture's instruction from Invitrogen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_hyb_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_scan_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_data_processing | Raw array data was processed by the R/Bioconductor implementation of Robust Multi-chip Average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Duonan,,Yu
| | Sample_contact_email | yud@email.chop.edu
| | Sample_contact_phone | 215-590-0968
| | Sample_contact_department | hematology
| | Sample_contact_institute | The children's hospital of philadelphia
| | Sample_contact_address | 3615 Civic center Blvd, ARC Rm315F
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | PA 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM525nnn/GSM525474/suppl/GSM525474.CEL.gz
| | Sample_series_id | GSE21041
| | Sample_data_row_count | 45101
| | |
|
GSM525475 | GPL1261 |
|
KO_548
|
Ter119+/CD71+/FSC-high miR-144/451-null BM cells
|
cell type: primary bone marrow cell
mirna construct: mir 548
genotype/variation: miR-144/451 knockout
|
Gene expression data from miR-144/451-null primary Ter119+/CD71+/FSC-high bone marrow cells
|
| Sample_geo_accession | GSM525475
| | Sample_status | Public on Jul 15 2010
| | Sample_submission_date | Mar 24 2010
| | Sample_last_update_date | Jul 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary cells were stained with Ter119 and CD71 antibodies and double positive cells with large cell size (FSC high) were sorted directly to Trizol LS reagent for total RNA extraction.
| | Sample_growth_protocol_ch1 | Bone marrow cells were freshly isolated from mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to the manufacture's instruction from Invitrogen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_hyb_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_scan_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_data_processing | Raw array data was processed by the R/Bioconductor implementation of Robust Multi-chip Average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Duonan,,Yu
| | Sample_contact_email | yud@email.chop.edu
| | Sample_contact_phone | 215-590-0968
| | Sample_contact_department | hematology
| | Sample_contact_institute | The children's hospital of philadelphia
| | Sample_contact_address | 3615 Civic center Blvd, ARC Rm315F
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | PA 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM525nnn/GSM525475/suppl/GSM525475.CEL.gz
| | Sample_series_id | GSE21041
| | Sample_data_row_count | 45101
| | |
|
GSM525476 | GPL1261 |
|
KO_551
|
Ter119+/CD71+/FSC-high miR-144/451-null BM cells
|
cell type: primary bone marrow cell
mirna construct: mir 551
genotype/variation: miR-144/451 knockout
|
Gene expression data from miR-144/451-null primary Ter119+/CD71+/FSC-high bone marrow cells
|
| Sample_geo_accession | GSM525476
| | Sample_status | Public on Jul 15 2010
| | Sample_submission_date | Mar 24 2010
| | Sample_last_update_date | Jul 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary cells were stained with Ter119 and CD71 antibodies and double positive cells with large cell size (FSC high) were sorted directly to Trizol LS reagent for total RNA extraction.
| | Sample_growth_protocol_ch1 | Bone marrow cells were freshly isolated from mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | According to the manufacture's instruction from Invitrogen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_hyb_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_scan_protocol | According to the standard procesure from microarray core facility at the University of Pennsylvania (http://www.med.upenn.edu/microarr/Data%20Analysis/Affymetrix/methods.htm).
| | Sample_data_processing | Raw array data was processed by the R/Bioconductor implementation of Robust Multi-chip Average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Duonan,,Yu
| | Sample_contact_email | yud@email.chop.edu
| | Sample_contact_phone | 215-590-0968
| | Sample_contact_department | hematology
| | Sample_contact_institute | The children's hospital of philadelphia
| | Sample_contact_address | 3615 Civic center Blvd, ARC Rm315F
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | PA 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM525nnn/GSM525476/suppl/GSM525476.CEL.gz
| | Sample_series_id | GSE21041
| | Sample_data_row_count | 45101
| | |
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