Search results for the GEO ID: GSE21075  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM526887 | GPL1355 |
|
Control-1
|
liver of rat fed a high-fat diet without mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet without mulberry leaves
|
| Sample_geo_accession | GSM526887
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526887/suppl/GSM526887.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526888 | GPL1355 |
|
Control-2
|
liver of rat fed a high-fat diet without mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet without mulberry leaves
|
| Sample_geo_accession | GSM526888
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526888/suppl/GSM526888.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526889 | GPL1355 |
|
Control-3
|
liver of rat fed a high-fat diet without mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet without mulberry leaves
|
| Sample_geo_accession | GSM526889
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526889/suppl/GSM526889.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526890 | GPL1355 |
|
Control-4
|
liver of rat fed a high-fat diet without mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet without mulberry leaves
|
| Sample_geo_accession | GSM526890
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526890/suppl/GSM526890.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526891 | GPL1355 |
|
Control-5
|
liver of rat fed a high-fat diet without mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet without mulberry leaves
|
| Sample_geo_accession | GSM526891
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526891/suppl/GSM526891.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526892 | GPL1355 |
|
Mulberry-1
|
liver of rat fed a high-fat diet with mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet with mulberry leaves
|
| Sample_geo_accession | GSM526892
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526892/suppl/GSM526892.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526893 | GPL1355 |
|
Mulberry-2
|
liver of rat fed a high-fat diet with mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet with mulberry leaves
|
| Sample_geo_accession | GSM526893
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526893/suppl/GSM526893.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526894 | GPL1355 |
|
Mulberry-3
|
liver of rat fed a high-fat diet with mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet with mulberry leaves
|
| Sample_geo_accession | GSM526894
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526894/suppl/GSM526894.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526895 | GPL1355 |
|
Mulberry-4
|
liver of rat fed a high-fat diet with mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet with mulberry leaves
|
| Sample_geo_accession | GSM526895
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526895/suppl/GSM526895.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
|
GSM526896 | GPL1355 |
|
Mulberry-5
|
liver of rat fed a high-fat diet with mulberry leaves
|
strain: Wistar/ST
|
gene expression data from liver of rat fed a high-fat diet with mulberry leaves
|
| Sample_geo_accession | GSM526896
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Mar 25 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats fed a high-fat diet were orally administrated dried mulberry leaf powder suspended in 0.5% carboxymethylcellulose at 0 or 500 mg/kg body weight/day. The administration was performed on a 6 weekly basis by gastric probe after fasting overnight. After 7 weeks, rats were anesthetized and killed by exsanguination. Parts of liver of each rat was taken and immediately immersed in RNAlater (Applied Biosystems).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAiso extraction (Takara Bio) of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual) from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using statistical language R and MAS 5.0 software in Affy package.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yukihiro,,Kobayashi
| | Sample_contact_email | yukihiro@kaiyodai.ac.jp, yukihiro_kobayashi@oasis.ocn.ne.jp
| | Sample_contact_laboratory | Course of Safety Management in Food Supply Chain
| | Sample_contact_department | Graduate School of Marine Science and Technology
| | Sample_contact_institute | Tokyo University of Marine Science and Technology
| | Sample_contact_address | 4-5-7, Konan
| | Sample_contact_city | Minato-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 108-8477
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM526nnn/GSM526896/suppl/GSM526896.CEL.gz
| | Sample_series_id | GSE21075
| | Sample_data_row_count | 31099
| | |
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