Search results for the GEO ID: GSE21143  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM529445 | GPL1261 |
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NSC_FBS_V1
|
p53-null NSC, vector
|
cell type: primary p53-null neural stem cells
retroviral expression: vector
|
Vector-1
|
| Sample_geo_accession | GSM529445
| | Sample_status | Public on Jun 14 2010
| | Sample_submission_date | Mar 30 2010
| | Sample_last_update_date | Jun 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | p53-null NSCs were infected with retrovirus expressing either control vector or PlagL2, and cultured in 1% FBS for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Arrays were normalized using MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529445/suppl/GSM529445.CEL.gz
| | Sample_series_id | GSE21143
| | Sample_data_row_count | 45101
| | |
|
GSM529448 | GPL1261 |
|
NSC_FBS_L1
|
p53-null NSC, PlagL2
|
cell type: primary p53-null neural stem cells
retroviral expression: PlagL2
|
PlagL2-1
|
| Sample_geo_accession | GSM529448
| | Sample_status | Public on Jun 14 2010
| | Sample_submission_date | Mar 30 2010
| | Sample_last_update_date | Jun 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | p53-null NSCs were infected with retrovirus expressing either control vector or PlagL2, and cultured in 1% FBS for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Arrays were normalized using MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529448/suppl/GSM529448.CEL.gz
| | Sample_series_id | GSE21143
| | Sample_data_row_count | 45101
| | |
|
GSM529449 | GPL1261 |
|
NSC_FBS_V2
|
p53-null NSC, vector
|
cell type: primary p53-null neural stem cells
retroviral expression: vector
|
Vector-2
|
| Sample_geo_accession | GSM529449
| | Sample_status | Public on Jun 14 2010
| | Sample_submission_date | Mar 30 2010
| | Sample_last_update_date | Jun 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | p53-null NSCs were infected with retrovirus expressing either control vector or PlagL2, and cultured in 1% FBS for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Arrays were normalized using MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529449/suppl/GSM529449.CEL.gz
| | Sample_series_id | GSE21143
| | Sample_data_row_count | 45101
| | |
|
GSM529450 | GPL1261 |
|
NSC_FBS_L2
|
p53-null NSC, PlagL2
|
cell type: primary p53-null neural stem cells
retroviral expression: PlagL2
|
PlagL2-2
|
| Sample_geo_accession | GSM529450
| | Sample_status | Public on Jun 14 2010
| | Sample_submission_date | Mar 30 2010
| | Sample_last_update_date | Jun 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | p53-null NSCs were infected with retrovirus expressing either control vector or PlagL2, and cultured in 1% FBS for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Arrays were normalized using MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529450/suppl/GSM529450.CEL.gz
| | Sample_series_id | GSE21143
| | Sample_data_row_count | 45101
| | |
|
GSM529451 | GPL1261 |
|
NSC_FBS_V3
|
p53-null NSC, vector
|
cell type: primary p53-null neural stem cells
retroviral expression: vector
|
Vector-3
|
| Sample_geo_accession | GSM529451
| | Sample_status | Public on Jun 14 2010
| | Sample_submission_date | Mar 30 2010
| | Sample_last_update_date | Jun 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | p53-null NSCs were infected with retrovirus expressing either control vector or PlagL2, and cultured in 1% FBS for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Arrays were normalized using MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529451/suppl/GSM529451.CEL.gz
| | Sample_series_id | GSE21143
| | Sample_data_row_count | 45101
| | |
|
GSM529452 | GPL1261 |
|
NSC_FBS_L3
|
p53-null NSC, PlagL2
|
cell type: primary p53-null neural stem cells
retroviral expression: PlagL2
|
PlagL2-3
|
| Sample_geo_accession | GSM529452
| | Sample_status | Public on Jun 14 2010
| | Sample_submission_date | Mar 30 2010
| | Sample_last_update_date | Jun 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | p53-null NSCs were infected with retrovirus expressing either control vector or PlagL2, and cultured in 1% FBS for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Arrays were normalized using MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529452/suppl/GSM529452.CEL.gz
| | Sample_series_id | GSE21143
| | Sample_data_row_count | 45101
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