Result

Search results for the GEO ID: GSE21156

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Description

Characteristics

GSM529598

GPL1261

wild-type rostral forebrain at E9.5

Mouse rostral forebrain

tissue: Forebrain rostral to the caudal limit of the lateral ventricle genotype: wild type age: Embryonic day 9.5

Gene expression data from rostral forebrain of E9.5 wild-type mice

Sample_geo_accession	GSM529598
Sample_status	Public on Apr 02 2010
Sample_submission_date	Mar 31 2010
Sample_last_update_date	Apr 01 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Forebrain rostral to the caudal limit of the lateral ventricle was isolated manually from E9.5, E10.5, and E12.5 wild-type and Fezf1-/- Fezf2-/- mice.
Sample_growth_protocol_ch1	Mice were housed in an environmentally controlled room at the Animal Facility of the RIKEN Center for Developmental Biology (CDB) under the institutional guidelines for animal and recombinant DNA experiments.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated by Sepasol-RNA I (Nacalai Tesque) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	cDNA samples were subjected to the one-cycle target labeling procedure for biotin labeling by in vitro transcription (Affymetrix)
Sample_hyb_protocol	RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
Sample_scan_protocol	The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
Sample_data_processing	The raw data were summarized with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Masahiko,,Hibi
Sample_contact_email	hibi@bio.nagoya-u.ac.jp
Sample_contact_phone	81-52-789-5198
Sample_contact_fax	81-52-789-5053
Sample_contact_department	Bioscience and Biotechnology Center
Sample_contact_institute	Nagoya University
Sample_contact_address	Furocho, Chikusaku
Sample_contact_city	Nagoya
Sample_contact_state	Aichi
Sample_contact_zip/postal_code	464-8601
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529598/suppl/GSM529598_wild_type_E9.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529598/suppl/GSM529598_wild_type_E9.CHP.gz
Sample_series_id	GSE21156
Sample_data_row_count	45101

GSM529599

GPL1261

Fezf1Fezf2KO rostral forebrain at E9.5

Mouse rostral forebrain

tissue: Forebrain rostral to the caudal limit of the lateral ventricle genotype: Fezf1-/- Fezf2-/- age: Embryonic day 9.5

Gene expression data from rostral forebrain of E9.5 Fezf1-/- Fezf2-/- mice

Sample_geo_accession	GSM529599
Sample_status	Public on Apr 02 2010
Sample_submission_date	Mar 31 2010
Sample_last_update_date	Apr 01 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Forebrain rostral to the caudal limit of the lateral ventricle was isolated manually from E9.5, E10.5, and E12.5 wild-type and Fezf1-/- Fezf2-/- mice.
Sample_growth_protocol_ch1	Mice were housed in an environmentally controlled room at the Animal Facility of the RIKEN Center for Developmental Biology (CDB) under the institutional guidelines for animal and recombinant DNA experiments.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated by Sepasol-RNA I (Nacalai Tesque) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	cDNA samples were subjected to the one-cycle target labeling procedure for biotin labeling by in vitro transcription (Affymetrix)
Sample_hyb_protocol	RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
Sample_scan_protocol	The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
Sample_data_processing	The raw data were summarized with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Masahiko,,Hibi
Sample_contact_email	hibi@bio.nagoya-u.ac.jp
Sample_contact_phone	81-52-789-5198
Sample_contact_fax	81-52-789-5053
Sample_contact_department	Bioscience and Biotechnology Center
Sample_contact_institute	Nagoya University
Sample_contact_address	Furocho, Chikusaku
Sample_contact_city	Nagoya
Sample_contact_state	Aichi
Sample_contact_zip/postal_code	464-8601
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529599/suppl/GSM529599_Fezf1Fezf2KO_E9.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529599/suppl/GSM529599_Fezf1Fezf2KO_E9.CHP.gz
Sample_series_id	GSE21156
Sample_data_row_count	45101

GSM529600

GPL1261

wild-type rostral forebrain at E10.5

Mouse rostral forebrain

tissue: Forebrain rostral to the caudal limit of the lateral ventricle genotype: wild type age: Embryonic day 10.5

Gene expression data from rostral forebrain of E10.5 wild-type mice

Sample_geo_accession	GSM529600
Sample_status	Public on Apr 02 2010
Sample_submission_date	Mar 31 2010
Sample_last_update_date	Apr 01 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Forebrain rostral to the caudal limit of the lateral ventricle was isolated manually from E9.5, E10.5, and E12.5 wild-type and Fezf1-/- Fezf2-/- mice.
Sample_growth_protocol_ch1	Mice were housed in an environmentally controlled room at the Animal Facility of the RIKEN Center for Developmental Biology (CDB) under the institutional guidelines for animal and recombinant DNA experiments.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated by Sepasol-RNA I (Nacalai Tesque) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	cDNA samples were subjected to the one-cycle target labeling procedure for biotin labeling by in vitro transcription (Affymetrix)
Sample_hyb_protocol	RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
Sample_scan_protocol	The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
Sample_data_processing	The raw data were summarized with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Masahiko,,Hibi
Sample_contact_email	hibi@bio.nagoya-u.ac.jp
Sample_contact_phone	81-52-789-5198
Sample_contact_fax	81-52-789-5053
Sample_contact_department	Bioscience and Biotechnology Center
Sample_contact_institute	Nagoya University
Sample_contact_address	Furocho, Chikusaku
Sample_contact_city	Nagoya
Sample_contact_state	Aichi
Sample_contact_zip/postal_code	464-8601
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529600/suppl/GSM529600_wild_type_E10.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529600/suppl/GSM529600_wild_type_E10.CHP.gz
Sample_series_id	GSE21156
Sample_data_row_count	45101

GSM529601

GPL1261

Fezf1Fezf2KO rostral forebrain at E10.5

Mouse rostral forebrain

tissue: Forebrain rostral to the caudal limit of the lateral ventricle genotype: Fezf1-/- Fezf2-/- age: Embryonic day 10.5

Gene expression data from rostral forebrain of E10.5 Fezf1-/- Fezf2-/- mice

Sample_geo_accession	GSM529601
Sample_status	Public on Apr 02 2010
Sample_submission_date	Mar 31 2010
Sample_last_update_date	Apr 01 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Forebrain rostral to the caudal limit of the lateral ventricle was isolated manually from E9.5, E10.5, and E12.5 wild-type and Fezf1-/- Fezf2-/- mice.
Sample_growth_protocol_ch1	Mice were housed in an environmentally controlled room at the Animal Facility of the RIKEN Center for Developmental Biology (CDB) under the institutional guidelines for animal and recombinant DNA experiments.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated by Sepasol-RNA I (Nacalai Tesque) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	cDNA samples were subjected to the one-cycle target labeling procedure for biotin labeling by in vitro transcription (Affymetrix)
Sample_hyb_protocol	RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
Sample_scan_protocol	The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
Sample_data_processing	The raw data were summarized with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Masahiko,,Hibi
Sample_contact_email	hibi@bio.nagoya-u.ac.jp
Sample_contact_phone	81-52-789-5198
Sample_contact_fax	81-52-789-5053
Sample_contact_department	Bioscience and Biotechnology Center
Sample_contact_institute	Nagoya University
Sample_contact_address	Furocho, Chikusaku
Sample_contact_city	Nagoya
Sample_contact_state	Aichi
Sample_contact_zip/postal_code	464-8601
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529601/suppl/GSM529601_Fezf1Fezf2KO_E10.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529601/suppl/GSM529601_Fezf1Fezf2KO_E10.CHP.gz
Sample_series_id	GSE21156
Sample_data_row_count	45101

GSM529602

GPL1261

wild-type rostral forebrain at E12.5

Mouse rostral forebrain

tissue: Forebrain rostral to the caudal limit of the lateral ventricle genotype: wild type age: Embryonic day 12.5

Gene expression data from rostral forebrain of E12.5 wild-type mice

Sample_geo_accession	GSM529602
Sample_status	Public on Apr 02 2010
Sample_submission_date	Mar 31 2010
Sample_last_update_date	Apr 01 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Forebrain rostral to the caudal limit of the lateral ventricle was isolated manually from E9.5, E10.5, and E12.5 wild-type and Fezf1-/- Fezf2-/- mice.
Sample_growth_protocol_ch1	Mice were housed in an environmentally controlled room at the Animal Facility of the RIKEN Center for Developmental Biology (CDB) under the institutional guidelines for animal and recombinant DNA experiments.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated by Sepasol-RNA I (Nacalai Tesque) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	cDNA samples were subjected to the one-cycle target labeling procedure for biotin labeling by in vitro transcription (Affymetrix)
Sample_hyb_protocol	RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
Sample_scan_protocol	The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
Sample_data_processing	The raw data were summarized with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Masahiko,,Hibi
Sample_contact_email	hibi@bio.nagoya-u.ac.jp
Sample_contact_phone	81-52-789-5198
Sample_contact_fax	81-52-789-5053
Sample_contact_department	Bioscience and Biotechnology Center
Sample_contact_institute	Nagoya University
Sample_contact_address	Furocho, Chikusaku
Sample_contact_city	Nagoya
Sample_contact_state	Aichi
Sample_contact_zip/postal_code	464-8601
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529602/suppl/GSM529602_wild_type_E12.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529602/suppl/GSM529602_wild_type_E12.CHP.gz
Sample_series_id	GSE21156
Sample_data_row_count	45101

GSM529603

GPL1261

Fezf1Fezf2KO rostral forebrain at E12.5

Mouse rostral forebrain

tissue: Forebrain rostral to the caudal limit of the lateral ventricle genotype: Fezf1-/- Fezf2-/- age: Embryonic day 12.5

Gene expression data from rostral forebrain of E12.5 Fezf1-/- Fezf2-/- mice

Sample_geo_accession	GSM529603
Sample_status	Public on Apr 02 2010
Sample_submission_date	Mar 31 2010
Sample_last_update_date	Apr 01 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	Forebrain rostral to the caudal limit of the lateral ventricle was isolated manually from E9.5, E10.5, and E12.5 wild-type and Fezf1-/- Fezf2-/- mice.
Sample_growth_protocol_ch1	Mice were housed in an environmentally controlled room at the Animal Facility of the RIKEN Center for Developmental Biology (CDB) under the institutional guidelines for animal and recombinant DNA experiments.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated by Sepasol-RNA I (Nacalai Tesque) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	cDNA samples were subjected to the one-cycle target labeling procedure for biotin labeling by in vitro transcription (Affymetrix)
Sample_hyb_protocol	RNA was subsequently fragmented and hybridized to the GeneChip according to manufacturer’s instructions. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
Sample_scan_protocol	The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix).
Sample_data_processing	The raw data were summarized with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Masahiko,,Hibi
Sample_contact_email	hibi@bio.nagoya-u.ac.jp
Sample_contact_phone	81-52-789-5198
Sample_contact_fax	81-52-789-5053
Sample_contact_department	Bioscience and Biotechnology Center
Sample_contact_institute	Nagoya University
Sample_contact_address	Furocho, Chikusaku
Sample_contact_city	Nagoya
Sample_contact_state	Aichi
Sample_contact_zip/postal_code	464-8601
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529603/suppl/GSM529603_Fezf1Fezf2KO_E12.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529603/suppl/GSM529603_Fezf1Fezf2KO_E12.CHP.gz
Sample_series_id	GSE21156
Sample_data_row_count	45101

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