Search results for the GEO ID: GSE21164 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM529753 | GPL570 |
|
Quadriceps muscle at T0, control patient 1
|
Quadriceps muscle, control patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529753
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529753/suppl/GSM529753.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529754 | GPL570 |
|
Quadriceps muscle at T0, control patient 2
|
Quadriceps muscle, control patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529754
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529754/suppl/GSM529754.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529755 | GPL570 |
|
Quadriceps muscle at T0, control patient 3
|
Quadriceps muscle, control patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529755
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529755/suppl/GSM529755.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529756 | GPL570 |
|
Quadriceps muscle at T0, control patient 4
|
Quadriceps muscle, control patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529756
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529756/suppl/GSM529756.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529757 | GPL570 |
|
Quadriceps muscle at T0, treatment patient 1
|
Quadriceps muscle, treatment patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of treatment patient
|
Sample_geo_accession | GSM529757
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529757/suppl/GSM529757.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529758 | GPL570 |
|
Quadriceps muscle at T0, treatment patient 2
|
Quadriceps muscle, treatment patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of treatment patient
|
Sample_geo_accession | GSM529758
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529758/suppl/GSM529758.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529759 | GPL570 |
|
Quadriceps muscle at T0, treatment patient 3
|
Quadriceps muscle, treatment patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of treatment patient
|
Sample_geo_accession | GSM529759
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529759/suppl/GSM529759.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529760 | GPL570 |
|
Quadriceps muscle at T0, treatment patient 4
|
Quadriceps muscle, treatment patient, T0
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T0
|
Gene expression data from quadriceps muscle biopsy of treatment patient
|
Sample_geo_accession | GSM529760
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529760/suppl/GSM529760.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529761 | GPL570 |
|
Quadriceps muscle at T1, control patient 1
|
Quadriceps muscle, control patient, T1
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T1
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529761
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529761/suppl/GSM529761.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529762 | GPL570 |
|
Quadriceps muscle at T1, control patient 2
|
Quadriceps muscle, control patient, T1
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T1
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529762
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529762/suppl/GSM529762.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529763 | GPL570 |
|
Quadriceps muscle at T1, control patient 3
|
Quadriceps muscle, control patient, T1
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T1
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529763
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529763/suppl/GSM529763.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529764 | GPL570 |
|
Quadriceps muscle at T1, control patient 4
|
Quadriceps muscle, control patient, T1
|
tissue type: Quadriceps muscle
patient group: total knee arthroplasty control patient
time point: T1
|
Gene expression data from quadriceps muscle biopsy of control patient
|
Sample_geo_accession | GSM529764
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529764/suppl/GSM529764.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
| |
|
GSM529765 | GPL570 |
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Quadriceps muscle at T1, treatment patient 1
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Quadriceps muscle, treatment patient, T1
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tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T1
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Gene expression data from quadriceps muscle biopsy of treatment patient
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Sample_geo_accession | GSM529765
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529765/suppl/GSM529765.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
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GSM529766 | GPL570 |
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Quadriceps muscle at T1, treatment patient 2
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Quadriceps muscle, treatment patient, T1
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tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T1
|
Gene expression data from quadriceps muscle biopsy of treatment patient
|
Sample_geo_accession | GSM529766
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529766/suppl/GSM529766.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
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GSM529767 | GPL570 |
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Quadriceps muscle at T1, treatment patient 3
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Quadriceps muscle, treatment patient, T1
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tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T1
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Gene expression data from quadriceps muscle biopsy of treatment patient
|
Sample_geo_accession | GSM529767
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529767/suppl/GSM529767.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
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GSM529768 | GPL570 |
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Quadriceps muscle at T1, treatment patient 4
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Quadriceps muscle, treatment patient, T1
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tissue type: Quadriceps muscle
patient group: total knee arthroplasty treatment patient
time point: T1
|
Gene expression data from quadriceps muscle biopsy of treatment patient
|
Sample_geo_accession | GSM529768
| Sample_status | Public on Apr 02 2010
| Sample_submission_date | Apr 01 2010
| Sample_last_update_date | Apr 01 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Patients in the treatment group received ischaemic preconditioning prior to total knee replacement surgery. Ischaemic preconditioning consisted of three five-minute periods of tourniquet insulflation on the lower operative limb, interrupted by five-minute periods of reperfusion.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TriReagent extraction of RNA was carried out according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol for 6ug of total RNA (Expression Analysis Technical Manual, 2001, Affymetrix.
| Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16 hours at 45oC on the Affymetrix U113 Plus 2.0 array. The array was then washed and stained on the GeneChip Fluidics Station 450.
| Sample_scan_protocol | The array was scanned using the GeneChip Scanner 3000.
| Sample_data_processing | The raw data from the scanner were analysed using the Rosetta Error Model (Rosetta Resolver 7.0) to generate processed intensity values. The following gene filtering was applied to the data: intensity p-value filter, background filter, fold change filter and signature p-value filter.
| Sample_platform_id | GPL570
| Sample_contact_name | Kevin,,Mulhall
| Sample_contact_institute | University College Dublin
| Sample_contact_address | Belfield
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | n/a
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM529nnn/GSM529768/suppl/GSM529768.CEL.gz
| Sample_series_id | GSE21164
| Sample_data_row_count | 54675
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