Search results for the GEO ID: GSE21189  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM530221 | GPL1261 |
|
Polg_D257A_GN_13mo_2-17M
|
PolgD257A/D257A mice, gastrocnemius muscle
|
strain: PolgD257A/D257A mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530221
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530221/suppl/GSM530221.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530221/suppl/GSM530221.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530222 | GPL1261 |
|
Polg_D257A_GN_13mo_2-21M
|
PolgD257A/D257A mice, gastrocnemius muscle
|
strain: PolgD257A/D257A mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530222
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530222/suppl/GSM530222.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530222/suppl/GSM530222.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530223 | GPL1261 |
|
Polg_D257A_GN_13mo_2-25M
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PolgD257A/D257A mice, gastrocnemius muscle
|
strain: PolgD257A/D257A mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530223
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530223/suppl/GSM530223.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530223/suppl/GSM530223.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530224 | GPL1261 |
|
Polg_D257A_GN_13mo_2-27M
|
PolgD257A/D257A mice, gastrocnemius muscle
|
strain: PolgD257A/D257A mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530224
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530224/suppl/GSM530224.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530224/suppl/GSM530224.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530225 | GPL1261 |
|
Polg_D257A_GN_13mo_2-30M
|
PolgD257A/D257A mice, gastrocnemius muscle
|
strain: PolgD257A/D257A mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530225
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530225/suppl/GSM530225.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530225/suppl/GSM530225.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530226 | GPL1261 |
|
Polg_WT_GN_13mo_1-12M
|
Polg+/+ mice, gastrocnemius muscle
|
strain: Polg+/+ mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530226
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530226/suppl/GSM530226.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530226/suppl/GSM530226.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530227 | GPL1261 |
|
Polg_WT_GN_13mo_1-13M
|
Polg+/+ mice, gastrocnemius muscle
|
strain: Polg+/+ mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530227
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530227/suppl/GSM530227.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530227/suppl/GSM530227.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530228 | GPL1261 |
|
Polg_WT_GN_13mo_2-3M
|
Polg+/+ mice, gastrocnemius muscle
|
strain: Polg+/+ mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530228
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530228/suppl/GSM530228.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530228/suppl/GSM530228.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530229 | GPL1261 |
|
Polg_WT_GN_13mo_2-32M
|
Polg+/+ mice, gastrocnemius muscle
|
strain: Polg+/+ mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530229
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530229/suppl/GSM530229.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530229/suppl/GSM530229.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
| | |
|
GSM530230 | GPL1261 |
|
Polg_WT_GN_13mo_3-18M
|
Polg+/+ mice, gastrocnemius muscle
|
strain: Polg+/+ mice
gender: male
age: 13 months
tissue: gastrocnemius muscle
|
Affymetrix standard spike controls were used in all experiments (eukaryotic hybridization control kit).
|
| Sample_geo_accession | GSM530230
| | Sample_status | Public on May 01 2010
| | Sample_submission_date | Apr 04 2010
| | Sample_last_update_date | Apr 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | a) Gastrocnemius muscle tissue was dissected and immediately flash-frozen in liquid nitrogen.
| | Sample_extract_protocol_ch1 | b) Total RNA was isolated from cochlea tissues using the TriZol Reagent (Invitrogen) according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling (Enzo BioArray IVT kit) was accomplished according to the manufacturer’s instructions.
| | Sample_hyb_protocol | Hybridization (hybridization oven 640), and washing and staining (fluidics station 400) (Affymetrix) were accomplished according to the manufacturer’s instructions.
| | Sample_scan_protocol | Arrays were scanned on the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | Image analysis was performed using GCOS 1.3 (Affymetrix). Each array was scaled (all probe sets) to a target signal of 500 before comparison in GCOS 1.3.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Takuya,,Miyakawa
| | Sample_contact_email | atmiya@mail.ecc.u-tokyo.ac.jp
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1 Yayoi, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530230/suppl/GSM530230.cel.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM530nnn/GSM530230/suppl/GSM530230.chp.gz
| | Sample_series_id | GSE21189
| | Sample_data_row_count | 45101
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