Search results for the GEO ID: GSE21293 |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM532220 | GPL570 |
|
E143-1I
|
E143-1I
|
engineered escc: invading (invasive)
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532220
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532220/suppl/GSM532220_E143-1I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532221 | GPL570 |
|
E143-1N
|
E143-1N
|
engineered escc: non-invading
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532221
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532221/suppl/GSM532221_E143-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532222 | GPL570 |
|
E143-2I
|
E143-2I
|
engineered escc: invading (invasive)
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532222
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532222/suppl/GSM532222_E143-2I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532223 | GPL570 |
|
E143-2N
|
E143-2N
|
engineered escc: non-invading
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532223
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532223/suppl/GSM532223_E143-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532224 | GPL570 |
|
E143-3I
|
E143-3I
|
engineered escc: invading (invasive)
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532224
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532224/suppl/GSM532224_E143-3I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532225 | GPL570 |
|
E143-3N
|
E143-3N
|
engineered escc: non-invading
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532225
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532225/suppl/GSM532225_E143-3N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532226 | GPL570 |
|
E175-1I
|
E175-1I
|
engineered escc: invading (invasive)
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532226
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532226/suppl/GSM532226_E175-1I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532227 | GPL570 |
|
E175-1N
|
E175-1N
|
engineered escc: non-invading
p53 mutation: R175H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532227
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532227/suppl/GSM532227_E175-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532228 | GPL570 |
|
E175-2I
|
E175-2I
|
engineered escc: invading (invasive)
p53 mutation: R175H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532228
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532228/suppl/GSM532228_E175-2I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532229 | GPL570 |
|
E175-2N
|
E175-2N
|
engineered escc: non-invading
p53 mutation: R175H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532229
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532229/suppl/GSM532229_E175-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532230 | GPL570 |
|
E175-3I
|
E175-3I
|
engineered escc: invading (invasive)
p53 mutation: R175H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532230
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532230/suppl/GSM532230_E175-3I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532231 | GPL570 |
|
E175-3N
|
E175-3N
|
engineered escc: non-invading
p53 mutation: R175H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532231
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532231/suppl/GSM532231_E175-3N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532232 | GPL570 |
|
E248-1I
|
E248-1I
|
engineered escc: invading (invasive)
p53 mutation: R248W
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532232
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532232/suppl/GSM532232_E248-1I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532233 | GPL570 |
|
E248-1N
|
E248-1N
|
engineered escc: non-invading
p53 mutation: R248W
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532233
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532233/suppl/GSM532233_E248-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532234 | GPL570 |
|
E248-2I
|
E248-2I
|
engineered escc: invading (invasive)
p53 mutation: R248W
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532234
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532234/suppl/GSM532234_E248-2I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532235 | GPL570 |
|
E248-2N
|
E248-2N
|
engineered escc: non-invading
p53 mutation: V143A
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532235
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532235/suppl/GSM532235_E248-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532236 | GPL570 |
|
E273-1I
|
E273-1I
|
engineered escc: invading (invasive)
p53 mutation: R273H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532236
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532236/suppl/GSM532236_E273-1I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532237 | GPL570 |
|
E273-1N
|
E273-1N
|
engineered escc: non-invading
p53 mutation: 2R73H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532237
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532237/suppl/GSM532237_E273-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532238 | GPL570 |
|
E273-2I
|
E273-2I
|
engineered escc: invading (invasive)
p53 mutation: R273H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532238
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532238/suppl/GSM532238_E273-2I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532239 | GPL570 |
|
E273-2N
|
E273-2N
|
engineered escc: non-invading
p53 mutation: R273H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532239
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532239/suppl/GSM532239_E273-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532240 | GPL570 |
|
E273-3N
|
E273-3N
|
engineered escc: non-invading
p53 mutation: R273H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532240
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532240/suppl/GSM532240_E273-3N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532241 | GPL570 |
|
Epuro-1N
|
Epuro-1N
|
engineered escc: non-invading
p53 mutation: none
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532241
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532241/suppl/GSM532241_Epuro-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532242 | GPL570 |
|
Epuro-2N
|
Epuro-2N
|
engineered escc: non-invading
p53 mutation: none
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532242
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532242/suppl/GSM532242_Epuro-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532243 | GPL570 |
|
Epuro-3N
|
Epuro-3N
|
engineered escc: non-invading
p53 mutation: none
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532243
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532243/suppl/GSM532243_Epuro-3N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532244 | GPL570 |
|
n143-1N
|
n143-1N
|
engineered escc: non-invading
p53 mutation: V143A
egfr overexpression: no
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532244
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532244/suppl/GSM532244_n143-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532245 | GPL570 |
|
n143-2N
|
n143-2N
|
engineered escc: non-invading
p53 mutation: V143A
egfr overexpression: no
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532245
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532245/suppl/GSM532245_n143-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532246 | GPL570 |
|
n175-1N
|
n175-1N
|
engineered escc: non-invading
p53 mutation: R175H
egfr overexpression: no
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532246
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532246/suppl/GSM532246_n175-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532247 | GPL570 |
|
n175-2N
|
n175-2N
|
engineered escc: non-invading
p53 mutation: R175H
egfr overexpression: no
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532247
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532247/suppl/GSM532247_n175-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532248 | GPL570 |
|
n248-1N
|
n248-1N
|
engineered escc: non-invading
p53 mutation: V143A
egfr overexpression: no
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532248
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532248/suppl/GSM532248_n248-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532249 | GPL570 |
|
n248-2N
|
n248-2N
|
engineered escc: non-invading
p53 mutation: R248W
egfr overexpression: no
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532249
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532249/suppl/GSM532249_n248-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532250 | GPL570 |
|
n273-1N
|
n273-1N
|
engineered escc: non-invading
p53 mutation: R273H
egfr overexpression: no
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532250
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532250/suppl/GSM532250_n273-1N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532251 | GPL570 |
|
n273-2N
|
n273-2N
|
engineered escc: non-invading
p53 mutation: R273H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532251
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532251/suppl/GSM532251_n273-2N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532252 | GPL570 |
|
R248-3I
|
E248-3I
|
engineered escc: invading (invasive)
p53 mutation: R248W
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532252
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532252/suppl/GSM532252_R248-3I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532253 | GPL570 |
|
R248-3N
|
E248-3N
|
engineered escc: non-invading
p53 mutation: R248W
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532253
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532253/suppl/GSM532253_R248-3N.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
GSM532254 | GPL570 |
|
E273-3I
|
n143-1N
|
engineered escc: invading (invasive)
p53 mutation: R273H
egfr over-expression: yes
htert over-expression: yes
|
3D cultured genetically engineered human esophageal cells
|
Sample_geo_accession | GSM532254
| Sample_status | Public on Jun 22 2010
| Sample_submission_date | Apr 12 2010
| Sample_last_update_date | Jun 21 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from laser-capture microdissected organotypic cultures using the Arcturus PicoPure kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | The fragmented cRNA was hybridised to HGU133 arrays at 45 °C in a hybridization oven for 16 hr)
| Sample_scan_protocol | Chip scanning was done with an Affymetrix Gene Array Scanner G2500A.
| Sample_data_processing | The analysis was normalized using the LVS (least-variant set) method. Reference: PMID 18318917. The software used for the microarray analysis is the SAS/STAT software version 9.1 of the SAS system for PC.
| Sample_platform_id | GPL570
| Sample_contact_name | Sangbae,,Kim
| Sample_contact_email | skim9@mdanderson.org
| Sample_contact_phone | (713)745-8525
| Sample_contact_department | Dept of Systems Biology
| Sample_contact_institute | The University of Texas M.D. Anderson Cancer Center
| Sample_contact_address | 7435 Fannin Street, Unit 950
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77054
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532254/suppl/GSM532254_E273-3I.CEL.gz
| Sample_series_id | GSE21293
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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