Search results for the GEO ID: GSE21329  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM532987 | GPL341 |
|
Fat AG1
|
fatty (fa/fa), adipose tissue (epididymal), AG035029
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM532987
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532987/suppl/GSM532987_032504_FAT_AG035029a.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532988 | GPL341 |
|
Fat AG2
|
fatty (fa/fa), adipose tissue (epididymal), AG035029
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM532988
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532988/suppl/GSM532988_032504_FAT_AG035029b.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532989 | GPL341 |
|
Fat AG3
|
fatty (fa/fa), adipose tissue (epididymal), AG035029
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM532989
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532989/suppl/GSM532989_032504_FAT_AG035029c.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532990 | GPL341 |
|
Fat FC1
|
fatty (fa/fa) adipose tissue (epididymal)
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM532990
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532990/suppl/GSM532990_032504_FAT_FC1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532991 | GPL341 |
|
Fat FC2
|
fatty (fa/fa) adipose tissue (epididymal)
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM532991
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532991/suppl/GSM532991_032504_FAT_FC2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532992 | GPL341 |
|
Fat FC3
|
fatty (fa/fa) adipose tissue (epididymal)
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM532992
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532992/suppl/GSM532992_032504_FAT_FC3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532993 | GPL341 |
|
Fat LC1
|
lean (fa/+) adipose tissue (epididymal)
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM532993
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532993/suppl/GSM532993_032504_FAT_LC1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532994 | GPL341 |
|
Fat LC2
|
lean (fa/+) adipose tissue (epididymal)
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM532994
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532994/suppl/GSM532994_032504_FAT_LC2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532995 | GPL341 |
|
Fat LC3
|
lean (fa/+) adipose tissue (epididymal)
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM532995
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532995/suppl/GSM532995_032504_FAT_LC3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532996 | GPL341 |
|
Fat Pio1
|
fatty (fa/fa), adipose tissue (epididymal), Pioglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM532996
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532996/suppl/GSM532996_032504_FAT_Pio1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532997 | GPL341 |
|
Fat Pio2
|
fatty (fa/fa), adipose tissue (epididymal), Pioglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM532997
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532997/suppl/GSM532997_032504_FAT_Pio2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532998 | GPL341 |
|
Fat Pio3
|
fatty (fa/fa), adipose tissue (epididymal), Pioglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM532998
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532998/suppl/GSM532998_032504_FAT_Pio3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM532999 | GPL341 |
|
Fat Rosi1
|
fatty (fa/fa), adipose tissue (epididymal), Rosiglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM532999
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM532nnn/GSM532999/suppl/GSM532999_032504_FAT_Rosi1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533000 | GPL341 |
|
Fat Rosi2
|
fatty (fa/fa), adipose tissue (epididymal), Rosiglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533000
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533000/suppl/GSM533000_032504_FAT_Rosi2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533001 | GPL341 |
|
Fat Rosi3
|
fatty (fa/fa), adipose tissue (epididymal), Rosiglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533001
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533001/suppl/GSM533001_032504_FAT_Rosi3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533002 | GPL341 |
|
Fat Tro1
|
fatty (fa/fa), adipose tissue (epididymal), Troglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533002
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533002/suppl/GSM533002_032504_FAT_Tro1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533003 | GPL341 |
|
Fat Tro2
|
fatty (fa/fa), adipose tissue (epididymal), Troglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533003
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533003/suppl/GSM533003_032504_FAT_Tro2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533004 | GPL341 |
|
Fat Tro3
|
fatty (fa/fa), adipose tissue (epididymal), Troglitazone
|
tissue: adipose tissue (epididymal)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533004
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533004/suppl/GSM533004_032504_FAT_Tro3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533005 | GPL341 |
|
Liver AG1
|
fatty (fa/fa), liver, AG035029
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM533005
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533005/suppl/GSM533005_100804_Liver_AG1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533006 | GPL341 |
|
Liver AG2
|
fatty (fa/fa), liver, AG035029
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM533006
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533006/suppl/GSM533006_100804_Liver_AG2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533007 | GPL341 |
|
Liver AG3
|
fatty (fa/fa), liver, AG035029
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM533007
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533007/suppl/GSM533007_100804_Liver_AG3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533008 | GPL341 |
|
Liver FC1
|
fatty (fa/fa), liver
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533008
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533008/suppl/GSM533008_100804_Liver_FC1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533009 | GPL341 |
|
Liver FC2
|
fatty (fa/fa), liver
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533009
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533009/suppl/GSM533009_100804_Liver_FC2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533010 | GPL341 |
|
Liver FC3
|
fatty (fa/fa), liver
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533010
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533010/suppl/GSM533010_100804_Liver_FC3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533011 | GPL341 |
|
Liver LC1
|
lean (fa/+), liver
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533011
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533011/suppl/GSM533011_100804_Liver_LC1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533012 | GPL341 |
|
Liver LC2
|
lean (fa/+), liver
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533012
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533012/suppl/GSM533012_100804_Liver_LC2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533013 | GPL341 |
|
Liver LC3
|
lean (fa/+), liver
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533013
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533013/suppl/GSM533013_100804_Liver_LC3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533014 | GPL341 |
|
Liver Pio1
|
fatty (fa/fa), liver, Pioglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM533014
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533014/suppl/GSM533014_100804_Liver_Pio1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533015 | GPL341 |
|
Liver Pio2
|
fatty (fa/fa), liver, Pioglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM533015
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533015/suppl/GSM533015_100804_Liver_Pio2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533016 | GPL341 |
|
Liver Pio3
|
fatty (fa/fa), liver, Pioglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM533016
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533016/suppl/GSM533016_100804_Liver_Pio3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533017 | GPL341 |
|
Liver Rosi1
|
fatty (fa/fa), liver, Rosiglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533017
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533017/suppl/GSM533017_101304_Liver_Rosi1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533018 | GPL341 |
|
Liver Rosi2
|
fatty (fa/fa), liver, Rosiglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533018
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533018/suppl/GSM533018_100804_Liver_Rosi2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533019 | GPL341 |
|
Liver Rosi3
|
fatty (fa/fa), liver, Rosiglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533019
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533019/suppl/GSM533019_100804_Liver_Rosi3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533020 | GPL341 |
|
Liver Tro1
|
fatty (fa/fa), liver, Troglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533020
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533020/suppl/GSM533020_100804_Liver_Tro1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533021 | GPL341 |
|
Liver Tro2
|
fatty (fa/fa), liver, Troglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533021
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533021/suppl/GSM533021_100804_Liver_Tro2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533022 | GPL341 |
|
Liver Tro3
|
fatty (fa/fa), liver, Troglitazone
|
tissue: liver
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533022
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533022/suppl/GSM533022_100804_Liver_Tro3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533023 | GPL341 |
|
Muscle AG1
|
fatty (fa/fa), skeletal muscle (gastrocnemius), AG035029
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM533023
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533023/suppl/GSM533023_060104_SM_AG035029a.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533024 | GPL341 |
|
Muscle AG2
|
fatty (fa/fa), skeletal muscle (gastrocnemius), AG035029
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM533024
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533024/suppl/GSM533024_060104_SM_AG035029b.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533025 | GPL341 |
|
Muscle AG3
|
fatty (fa/fa), skeletal muscle (gastrocnemius), AG035029
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: AG035029
|
n/a
|
| Sample_geo_accession | GSM533025
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533025/suppl/GSM533025_060104_SM_AG035029c.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533026 | GPL341 |
|
Muscle FC1
|
fatty (fa/fa), skeletal muscle (gastrocnemius)
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533026
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533026/suppl/GSM533026_060104_SM_FC1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533027 | GPL341 |
|
Muscle FC2
|
fatty (fa/fa), skeletal muscle (gastrocnemius)
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533027
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533027/suppl/GSM533027_060104_SM_FC2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533028 | GPL341 |
|
Muscle FC3
|
fatty (fa/fa), skeletal muscle (gastrocnemius)
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533028
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533028/suppl/GSM533028_060104_SM_FC3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533029 | GPL341 |
|
Muscle LC1
|
lean (fa/+), skeletal muscle (gastrocnemius)
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533029
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533029/suppl/GSM533029_060104_SM_LC1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533030 | GPL341 |
|
Muscle LC2
|
lean (fa/+), skeletal muscle (gastrocnemius)
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533030
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533030/suppl/GSM533030_060104_SM_LC2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533031 | GPL341 |
|
Muscle LC3
|
lean (fa/+), skeletal muscle (gastrocnemius)
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: lean (fa/+)
pparγ ligand: normal chow
|
n/a
|
| Sample_geo_accession | GSM533031
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533031/suppl/GSM533031_060104_SM_LC3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533032 | GPL341 |
|
Muscle Pio1
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Pioglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM533032
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533032/suppl/GSM533032_060104_SM_Pio1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533033 | GPL341 |
|
Muscle Pio2
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Pioglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM533033
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533033/suppl/GSM533033_060104_SM_Pio2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533034 | GPL341 |
|
Muscle Pio3
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Pioglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Pioglitazone
|
n/a
|
| Sample_geo_accession | GSM533034
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533034/suppl/GSM533034_061504_SM_Pio3_repeat2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533035 | GPL341 |
|
Muscle Rosi1
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Rosiglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533035
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533035/suppl/GSM533035_060104_SM_Rosi1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533036 | GPL341 |
|
Muscle Rosi2
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Rosiglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533036
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533036/suppl/GSM533036_060104_SM_Rosi2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533037 | GPL341 |
|
Muscle Rosi3
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Rosiglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Rosiglitazone
|
n/a
|
| Sample_geo_accession | GSM533037
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533037/suppl/GSM533037_060104_SM_Rosi3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533038 | GPL341 |
|
Muscle Tro1
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Troglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533038
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533038/suppl/GSM533038_060104_SM_Tro1.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533039 | GPL341 |
|
Muscle Tro2
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Troglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533039
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533039/suppl/GSM533039_060104_SM_Tro2.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
GSM533040 | GPL341 |
|
Muscle Tro3
|
fatty (fa/fa), skeletal muscle (gastrocnemius), Troglitazone
|
tissue: skeletal muscle (gastrocnemius)
gender: male
strain: Zucker
genotype/variation: fatty (fa/fa)
pparγ ligand: Troglitazone
|
n/a
|
| Sample_geo_accession | GSM533040
| | Sample_status | Public on Feb 11 2011
| | Sample_submission_date | Apr 13 2010
| | Sample_last_update_date | Feb 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue RNA was isolated using Qiagen RNeasy kits (Qiagen, Inc., Valencia, CA). Biotinylated-cRNA made from pooled RNA preparations (RNA from two rats per preparation) was used to probe Affymetrix Rat Expression 230A GeneChips (Affymetrix) as per the Invitrogen protocol (Invitrogen, Inc., Carlsbad, CA), three arrays per group.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA probes were in vitro transcribed using the BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences).
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | Data analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method
| | Sample_platform_id | GPL341
| | Sample_contact_name | Gene,,Hsiao
| | Sample_contact_email | gene@ucsd.edu
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533040/suppl/GSM533040_060104_SM_Tro3.CEL.gz
| | Sample_series_id | GSE21329
| | Sample_data_row_count | 15923
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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