Search results for the GEO ID: GSE21422  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM535604 | GPL570 |
|
DCIS 1, biological rep. 1
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535604
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535604/suppl/GSM535604_wke-cs-h01-25707dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535605 | GPL570 |
|
DCIS 2, biological rep. 2
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535605
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535605/suppl/GSM535605_wke-cs-h02-21007dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535606 | GPL570 |
|
DCIS 3, biological rep. 3
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535606
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535606/suppl/GSM535606_wke-cs-h04-1838dcis-040608-u133p-2_wdh.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535607 | GPL570 |
|
DCIS 4, biological rep. 4
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535607
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535607/suppl/GSM535607_wke-cs-h05-251006dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535608 | GPL570 |
|
DCIS 5, biological rep. 5
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535608
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535608/suppl/GSM535608_wke-cs-h06-171106dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535609 | GPL570 |
|
DCIS 6, biological rep. 6
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535609
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535609/suppl/GSM535609_wke-cs-h07-281106dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535610 | GPL570 |
|
DCIS 7, biological rep. 7
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535610
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535610/suppl/GSM535610_wke-cs-h08-121206dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535611 | GPL570 |
|
DCIS 8, biological rep. 8
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535611
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535611/suppl/GSM535611_wke-cs-h09-30107dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535612 | GPL570 |
|
DCIS 9, biological rep. 9
|
DCIS
|
tissue: tumor
disease state: DCIS
|
n/a
|
| Sample_geo_accession | GSM535612
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535612/suppl/GSM535612_wke-cs-h10-23408dcis-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535613 | GPL570 |
|
healthy breast 1, biological rep. 1
|
healthy
|
tissue: breast
disease state: healthy
|
n/a
|
| Sample_geo_accession | GSM535613
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535613/suppl/GSM535613_wke-cs-h11-ges22906re-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535614 | GPL570 |
|
healthy breast 2, biological rep. 2
|
healthy
|
tissue: breast
disease state: healthy
|
n/a
|
| Sample_geo_accession | GSM535614
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535614/suppl/GSM535614_wke-cs-h12-ges22806li-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535615 | GPL570 |
|
healthy breast 3, biological rep. 3
|
healthy
|
tissue: breast
disease state: healthy
|
n/a
|
| Sample_geo_accession | GSM535615
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535615/suppl/GSM535615_wke-cs-h13-ges19906-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535616 | GPL570 |
|
healthy breast 4, biological rep. 4
|
healthy
|
tissue: breast
disease state: healthy
|
n/a
|
| Sample_geo_accession | GSM535616
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535616/suppl/GSM535616_wke-cs-h14-ges171006-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535617 | GPL570 |
|
healthy breast 5, biological rep. 5
|
healthy
|
tissue: breast
disease state: healthy
|
n/a
|
| Sample_geo_accession | GSM535617
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535617/suppl/GSM535617_wke-cs-h15-ges301006-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535618 | GPL570 |
|
IDC 1, biological rep. 1
|
tumor
|
tissue: tumor
disease state: IDC
|
n/a
|
| Sample_geo_accession | GSM535618
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535618/suppl/GSM535618_wke-cs-h16-tm6207-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535619 | GPL570 |
|
IDC 2, biological rep. 2
|
tumor
|
tissue: tumor
disease state: IDC
|
n/a
|
| Sample_geo_accession | GSM535619
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535619/suppl/GSM535619_wke-cs-h17-tm2920-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535620 | GPL570 |
|
IDC 3, biological rep. 3
|
tumor
|
tissue: tumor
disease state: IDC
|
n/a
|
| Sample_geo_accession | GSM535620
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535620/suppl/GSM535620_wke-cs-h18-tm3016-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535621 | GPL570 |
|
IDC 4, biological rep. 4
|
tumor
|
tissue: tumor
disease state: IDC
|
n/a
|
| Sample_geo_accession | GSM535621
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535621/suppl/GSM535621_wke-cs-h19-tm3447-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
GSM535622 | GPL570 |
|
IDC 5, biological rep. 5
|
tumor
|
tissue: tumor
disease state: IDC
|
n/a
|
| Sample_geo_accession | GSM535622
| | Sample_status | Public on Apr 11 2011
| | Sample_submission_date | Apr 21 2010
| | Sample_last_update_date | Apr 11 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Fresh frozen samples were optaint from the Robert-Rössle-Biobank at the ECRC (Experimental and Clinical Research Center).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy lipip tissue Kit (Qiagen) was used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 µg total RNA (GeneChip® One-Cycle Target Labelling Kit (Affymetrix)).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 (Affymetrix).
| | Sample_data_processing | GeneSpring GX 10.0 (Agilent) was used for data analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Celine,,Schäfer
| | Sample_contact_email | celine.schaefer@charite.de
| | Sample_contact_laboratory | AG Grötzinger
| | Sample_contact_department | Med. Kl. m.S. Hepatologie und Gastroenterologie
| | Sample_contact_institute | Charité
| | Sample_contact_address | Augustenburger Platz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM535nnn/GSM535622/suppl/GSM535622_wke-cs-h20-tm1906-040608-u133p-2.CEL.gz
| | Sample_series_id | GSE21422
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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