Search results for the GEO ID: GSE21476  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM536384 | GPL1355 |
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76h+BGP rep1
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UMR106-01 culture, 76 h after plating, mineralizing conditions 10% fetal bovine serum
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cell line: UMR-106-01
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UMR106-01 culture, 76 h after plating, mineralizing conditions 10% fetal bovine serum
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| Sample_geo_accession | GSM536384
| | Sample_status | Public on Nov 13 2010
| | Sample_submission_date | Apr 22 2010
| | Sample_last_update_date | Nov 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At 64 hours after plating the cells are re-fed with Growth Medium containing 6.5 mM beta-glycerol phosphate, with or without 400 micromolar AEBSF protease inhibitor.
| | Sample_growth_protocol_ch1 | UMR-106-01 cells are seeded at 100,000 cells per cm2 at 37 C and 5% carbon dioxide in Eagle's minimum essential medium supplemented with Earle's salts, 1% non-essential amino acids, 10 mM final concentration HEPES, and 10% fetal bovine serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For RNA extraction, media was removed from one well at a time. Stat-60 solution (Tel-Test) was added and the cells were lysed by scraping with a wide mouth tip. The lysis was transferred to a pre-labeled 2 ml tube and placed directly on liquid nitrogen for quick freeze.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle std protocol
| | Sample_hyb_protocol | Affymetrix 1-cycle std protocol
| | Sample_scan_protocol | Affymetrix 1-cycle std protocol
| | Sample_data_processing | MAS5 using GCOS
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sridar,,Chittur
| | Sample_contact_email | schittur@albany.edu
| | Sample_contact_phone | 518-591-7215
| | Sample_contact_laboratory | Microarray Core
| | Sample_contact_department | Center for Functional Genomics
| | Sample_contact_institute | SUNY-University at Albany
| | Sample_contact_address | One Discovery Drive, CRC 342G
| | Sample_contact_city | Rensselaer
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 12144
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536384/suppl/GSM536384.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536384/suppl/GSM536384.CHP.gz
| | Sample_series_id | GSE21476
| | Sample_data_row_count | 31099
| | |
|
GSM536385 | GPL1355 |
|
76h+BGP rep2
|
UMR106-01 culture, 76 h after plating, mineralizing conditions 10% fetal bovine serum
|
cell line: UMR-106-01
|
UMR106-01 culture, 76 h after plating, mineralizing conditions 10% fetal bovine serum
|
| Sample_geo_accession | GSM536385
| | Sample_status | Public on Nov 13 2010
| | Sample_submission_date | Apr 22 2010
| | Sample_last_update_date | Nov 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At 64 hours after plating the cells are re-fed with Growth Medium containing 6.5 mM beta-glycerol phosphate, with or without 400 micromolar AEBSF protease inhibitor.
| | Sample_growth_protocol_ch1 | UMR-106-01 cells are seeded at 100,000 cells per cm2 at 37 C and 5% carbon dioxide in Eagle's minimum essential medium supplemented with Earle's salts, 1% non-essential amino acids, 10 mM final concentration HEPES, and 10% fetal bovine serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For RNA extraction, media was removed from one well at a time. Stat-60 solution (Tel-Test) was added and the cells were lysed by scraping with a wide mouth tip. The lysis was transferred to a pre-labeled 2 ml tube and placed directly on liquid nitrogen for quick freeze.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle std protocol
| | Sample_hyb_protocol | Affymetrix 1-cycle std protocol
| | Sample_scan_protocol | Affymetrix 1-cycle std protocol
| | Sample_data_processing | MAS5 using GCOS
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sridar,,Chittur
| | Sample_contact_email | schittur@albany.edu
| | Sample_contact_phone | 518-591-7215
| | Sample_contact_laboratory | Microarray Core
| | Sample_contact_department | Center for Functional Genomics
| | Sample_contact_institute | SUNY-University at Albany
| | Sample_contact_address | One Discovery Drive, CRC 342G
| | Sample_contact_city | Rensselaer
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 12144
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536385/suppl/GSM536385.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536385/suppl/GSM536385.CHP.gz
| | Sample_series_id | GSE21476
| | Sample_data_row_count | 31099
| | |
|
GSM536386 | GPL1355 |
|
76h+BGP rep3
|
UMR106-01 culture, 76 h after plating, mineralizing conditions 10% fetal bovine serum
|
cell line: UMR-106-01
|
UMR106-01 culture, 76 h after plating, mineralizing conditions 10% fetal bovine serum
|
| Sample_geo_accession | GSM536386
| | Sample_status | Public on Nov 13 2010
| | Sample_submission_date | Apr 22 2010
| | Sample_last_update_date | Nov 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At 64 hours after plating the cells are re-fed with Growth Medium containing 6.5 mM beta-glycerol phosphate, with or without 400 micromolar AEBSF protease inhibitor.
| | Sample_growth_protocol_ch1 | UMR-106-01 cells are seeded at 100,000 cells per cm2 at 37 C and 5% carbon dioxide in Eagle's minimum essential medium supplemented with Earle's salts, 1% non-essential amino acids, 10 mM final concentration HEPES, and 10% fetal bovine serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For RNA extraction, media was removed from one well at a time. Stat-60 solution (Tel-Test) was added and the cells were lysed by scraping with a wide mouth tip. The lysis was transferred to a pre-labeled 2 ml tube and placed directly on liquid nitrogen for quick freeze.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle std protocol
| | Sample_hyb_protocol | Affymetrix 1-cycle std protocol
| | Sample_scan_protocol | Affymetrix 1-cycle std protocol
| | Sample_data_processing | MAS5 using GCOS
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sridar,,Chittur
| | Sample_contact_email | schittur@albany.edu
| | Sample_contact_phone | 518-591-7215
| | Sample_contact_laboratory | Microarray Core
| | Sample_contact_department | Center for Functional Genomics
| | Sample_contact_institute | SUNY-University at Albany
| | Sample_contact_address | One Discovery Drive, CRC 342G
| | Sample_contact_city | Rensselaer
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 12144
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536386/suppl/GSM536386.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536386/suppl/GSM536386.CHP.gz
| | Sample_series_id | GSE21476
| | Sample_data_row_count | 31099
| | |
|
GSM536387 | GPL1355 |
|
76h+BGP+AEBSF rep1
|
UMR106-01 culture, 76 h after plating, mineralizing conditions plus 400 micromolar AEBSF protease inhibitor, 10% fetal bovine serum
|
cell line: UMR-106-01
|
UMR106-01 culture, 76 h after plating, mineralizing conditions plus 400 micromolar AEBSF protease inhibitor, 10% fetal bovine serum
|
| Sample_geo_accession | GSM536387
| | Sample_status | Public on Nov 13 2010
| | Sample_submission_date | Apr 22 2010
| | Sample_last_update_date | Nov 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At 64 hours after plating the cells are re-fed with Growth Medium containing 6.5 mM beta-glycerol phosphate, with or without 400 micromolar AEBSF protease inhibitor.
| | Sample_growth_protocol_ch1 | UMR-106-01 cells are seeded at 100,000 cells per cm2 at 37 C and 5% carbon dioxide in Eagle's minimum essential medium supplemented with Earle's salts, 1% non-essential amino acids, 10 mM final concentration HEPES, and 10% fetal bovine serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For RNA extraction, media was removed from one well at a time. Stat-60 solution (Tel-Test) was added and the cells were lysed by scraping with a wide mouth tip. The lysis was transferred to a pre-labeled 2 ml tube and placed directly on liquid nitrogen for quick freeze.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle std protocol
| | Sample_hyb_protocol | Affymetrix 1-cycle std protocol
| | Sample_scan_protocol | Affymetrix 1-cycle std protocol
| | Sample_data_processing | MAS5 using GCOS
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sridar,,Chittur
| | Sample_contact_email | schittur@albany.edu
| | Sample_contact_phone | 518-591-7215
| | Sample_contact_laboratory | Microarray Core
| | Sample_contact_department | Center for Functional Genomics
| | Sample_contact_institute | SUNY-University at Albany
| | Sample_contact_address | One Discovery Drive, CRC 342G
| | Sample_contact_city | Rensselaer
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 12144
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536387/suppl/GSM536387.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536387/suppl/GSM536387.CHP.gz
| | Sample_series_id | GSE21476
| | Sample_data_row_count | 31099
| | |
|
GSM536388 | GPL1355 |
|
76h+BGP+AEBSF rep2
|
UMR106-01 culture, 76 h after plating, mineralizing conditions plus 400 micromolar AEBSF protease inhibitor, 10% fetal bovine serum
|
cell line: UMR-106-01
|
UMR106-01 culture, 76 h after plating, mineralizing conditions plus 400 micromolar AEBSF protease inhibitor, 10% fetal bovine serum
|
| Sample_geo_accession | GSM536388
| | Sample_status | Public on Nov 13 2010
| | Sample_submission_date | Apr 22 2010
| | Sample_last_update_date | Nov 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At 64 hours after plating the cells are re-fed with Growth Medium containing 6.5 mM beta-glycerol phosphate, with or without 400 micromolar AEBSF protease inhibitor.
| | Sample_growth_protocol_ch1 | UMR-106-01 cells are seeded at 100,000 cells per cm2 at 37 C and 5% carbon dioxide in Eagle's minimum essential medium supplemented with Earle's salts, 1% non-essential amino acids, 10 mM final concentration HEPES, and 10% fetal bovine serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For RNA extraction, media was removed from one well at a time. Stat-60 solution (Tel-Test) was added and the cells were lysed by scraping with a wide mouth tip. The lysis was transferred to a pre-labeled 2 ml tube and placed directly on liquid nitrogen for quick freeze.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle std protocol
| | Sample_hyb_protocol | Affymetrix 1-cycle std protocol
| | Sample_scan_protocol | Affymetrix 1-cycle std protocol
| | Sample_data_processing | MAS5 using GCOS
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sridar,,Chittur
| | Sample_contact_email | schittur@albany.edu
| | Sample_contact_phone | 518-591-7215
| | Sample_contact_laboratory | Microarray Core
| | Sample_contact_department | Center for Functional Genomics
| | Sample_contact_institute | SUNY-University at Albany
| | Sample_contact_address | One Discovery Drive, CRC 342G
| | Sample_contact_city | Rensselaer
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 12144
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536388/suppl/GSM536388.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536388/suppl/GSM536388.CHP.gz
| | Sample_series_id | GSE21476
| | Sample_data_row_count | 31099
| | |
|
GSM536389 | GPL1355 |
|
76h+BGP+AEBSF rep3
|
UMR106-01 culture, 76 h after plating, mineralizing conditions plus 400 micromolar AEBSF protease inhibitor, 10% fetal bovine serum
|
cell line: UMR-106-01
|
UMR106-01 culture, 76 h after plating, mineralizing conditions plus 400 micromolar AEBSF protease inhibitor, 10% fetal bovine serum
|
| Sample_geo_accession | GSM536389
| | Sample_status | Public on Nov 13 2010
| | Sample_submission_date | Apr 22 2010
| | Sample_last_update_date | Nov 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At 64 hours after plating the cells are re-fed with Growth Medium containing 6.5 mM beta-glycerol phosphate, with or without 400 micromolar AEBSF protease inhibitor.
| | Sample_growth_protocol_ch1 | UMR-106-01 cells are seeded at 100,000 cells per cm2 at 37 C and 5% carbon dioxide in Eagle's minimum essential medium supplemented with Earle's salts, 1% non-essential amino acids, 10 mM final concentration HEPES, and 10% fetal bovine serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For RNA extraction, media was removed from one well at a time. Stat-60 solution (Tel-Test) was added and the cells were lysed by scraping with a wide mouth tip. The lysis was transferred to a pre-labeled 2 ml tube and placed directly on liquid nitrogen for quick freeze.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle std protocol
| | Sample_hyb_protocol | Affymetrix 1-cycle std protocol
| | Sample_scan_protocol | Affymetrix 1-cycle std protocol
| | Sample_data_processing | MAS5 using GCOS
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sridar,,Chittur
| | Sample_contact_email | schittur@albany.edu
| | Sample_contact_phone | 518-591-7215
| | Sample_contact_laboratory | Microarray Core
| | Sample_contact_department | Center for Functional Genomics
| | Sample_contact_institute | SUNY-University at Albany
| | Sample_contact_address | One Discovery Drive, CRC 342G
| | Sample_contact_city | Rensselaer
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 12144
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536389/suppl/GSM536389.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM536nnn/GSM536389/suppl/GSM536389.CHP.gz
| | Sample_series_id | GSE21476
| | Sample_data_row_count | 31099
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