Search results for the GEO ID: GSE21583 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM538875 | GPL1261 |
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Control mouse lung (1)
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Whole lung homogenate, -ACE2, -BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 transgene
treatment: none
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 transgene, fed doxycycline for 6 weeks starting at average age 5 months. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice. The Rosa26-rtTA2 transgene drives universal expression of a transactivator, which has no phenotype in the absence of other transgenes - this is thus a control group.
|
Sample_geo_accession | GSM538875
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538875/suppl/GSM538875.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538875/suppl/GSM538875.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
|
GSM538876 | GPL1261 |
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Control mouse lung (2)
|
Whole lung homogenate, -ACE2, -BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 transgene
treatment: none
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 transgene, fed doxycycline for 6 weeks starting at average age 5 months. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice. The Rosa26-rtTA2 transgene drives universal expression of a transactivator, which has no phenotype in the absence of other transgenes - this is thus a control group.
|
Sample_geo_accession | GSM538876
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538876/suppl/GSM538876.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538876/suppl/GSM538876.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
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GSM538877 | GPL1261 |
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Control mouse + chronic ACE2 lung (1)
|
Whole lung homogenate, +ACE2, -BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 transgene
treatment: ACE2
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 transgene, fed doxycycline for 6 weeks starting at average age 5 months, with recombinant human ACE2 in osmotic pumps infused for the final 2 weeks. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice.
|
Sample_geo_accession | GSM538877
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538877/suppl/GSM538877.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538877/suppl/GSM538877.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
|
GSM538878 | GPL1261 |
|
Control mouse + chronic ACE2 lung (2)
|
Whole lung homogenate, +ACE2, -BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 transgene
treatment: ACE2
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 transgene, fed doxycycline for 6 weeks starting at average age 5 months, with recombinant human ACE2 in osmotic pumps infused for the final 2 weeks. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice.
|
Sample_geo_accession | GSM538878
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538878/suppl/GSM538878.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538878/suppl/GSM538878.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
|
GSM538879 | GPL1261 |
|
Rosa26-BMPR2-R899X mouse + chronic ACE2 lung (1)
|
Whole lung homogenate, +ACE2, +BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes
treatment: ACE2
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes, fed doxycycline for 6 weeks starting at average age 5 months, with recombinant human ACE2 in osmotic pumps infused for the final 2 weeks. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice. These transgenics often develop pulmonary arterial hypertension.
|
Sample_geo_accession | GSM538879
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538879/suppl/GSM538879.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538879/suppl/GSM538879.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
|
GSM538880 | GPL1261 |
|
Rosa26-BMPR2-R899X mouse + chronic ACE2 lung (2)
|
Whole lung homogenate, +ACE2, +BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes
treatment: ACE2
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes, fed doxycycline for 6 weeks starting at average age 5 months, with recombinant human ACE2 in osmotic pumps infused for the final 2 weeks. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice. These transgenics often develop pulmonary arterial hypertension.
|
Sample_geo_accession | GSM538880
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538880/suppl/GSM538880.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538880/suppl/GSM538880.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
|
GSM538881 | GPL1261 |
|
Rosa26-BMPR2-R899X lung (1)
|
Whole lung homogenate, -ACE2, +BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes
treatment: none
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes, fed doxycycline for 6 weeks starting at average age 5 months, with vehicle control in osmotic pumps infused for the final 2 weeks. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice. These transgenics often develop pulmonary arterial hypertension.
|
Sample_geo_accession | GSM538881
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538881/suppl/GSM538881.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538881/suppl/GSM538881.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
|
GSM538882 | GPL1261 |
|
Rosa26-BMPR2-R899X lung (2)
|
Whole lung homogenate, -ACE2, +BMPR2
|
strain: FVB/N
gender: female
tissue: whole lung
genotype: heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes
treatment: none
|
Pooled RNA from whole lung homogenate from three female FVB/N mouse heterozygous for Rosa26-rtTA2 and TetO7-Bmpr2-R899X transgenes, fed doxycycline for 6 weeks starting at average age 5 months, with vehicle control in osmotic pumps infused for the final 2 weeks. Mice had near normal right ventricular systolic pressure (RVSP) at time of sacrifice. These transgenics often develop pulmonary arterial hypertension.
|
Sample_geo_accession | GSM538882
| Sample_status | Public on Aug 25 2010
| Sample_submission_date | Apr 28 2010
| Sample_last_update_date | May 04 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Heparin was injected into the jugular 5 minutes before sacrifice; right lung was flushed with PBS immediately after sacrifice, removed, and immediately converted to RNA using Qiagen rnEasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_hyb_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_scan_protocol | Standard Affymteric protocol (Affymetrix GeneChip Expression Analysis Manual).
| Sample_data_processing | Raw Affymetrix CHP and CEL files. Data processed using MAS5.0.
| Sample_platform_id | GPL1261
| Sample_contact_name | James,,West
| Sample_contact_email | j.west@vanderbilt.edu
| Sample_contact_laboratory | Pulmonary
| Sample_contact_department | Medicine
| Sample_contact_institute | Vanderbilt University
| Sample_contact_address | 4200 E 9TH Ave, Box B133
| Sample_contact_city | Nashville
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 37201
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538882/suppl/GSM538882.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM538nnn/GSM538882/suppl/GSM538882.CHP.gz
| Sample_series_id | GSE21583
| Sample_data_row_count | 45101
| |
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