Search results for the GEO ID: GSE21682  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM540894 | GPL1355 |
|
Blood macrophages, biological rep1
|
Blood macrophages
|
tissue: blood
|
Gene expression data from freshly isolated rat blood macrophages
Macrophages_C1-1
|
| Sample_geo_accession | GSM540894
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540894/suppl/GSM540894.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540895 | GPL1355 |
|
Blood macrophages, biological rep2
|
Blood macrophages
|
tissue: blood
|
Gene expression data from freshly isolated rat blood macrophages
Macrophages_C1-2
|
| Sample_geo_accession | GSM540895
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540895/suppl/GSM540895.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540896 | GPL1355 |
|
Blood macrophages, biological rep3
|
Blood macrophages
|
tissue: blood
|
Gene expression data from freshly isolated rat blood macrophages
Macrophages_C1-3
|
| Sample_geo_accession | GSM540896
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540896/suppl/GSM540896.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540897 | GPL1355 |
|
Fibrinogen activated macrophages, biological rep1
|
Fibrinogen activated macrophages
|
tissue: blood
|
Gene expression data from rat blood macrophages activated during 3 days on fibrinogen coated PTFE
Macrophages_C2-1
|
| Sample_geo_accession | GSM540897
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540897/suppl/GSM540897.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540898 | GPL1355 |
|
Fibrinogen activated macrophages, biological rep2
|
Fibrinogen activated macrophages
|
tissue: blood
|
Gene expression data from rat blood macrophages activated during 3 days on fibrinogen coated PTFE
Macrophages_C2-2
|
| Sample_geo_accession | GSM540898
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540898/suppl/GSM540898.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540899 | GPL1355 |
|
Fibrinogen activated macrophages, biological rep3
|
Fibrinogen activated macrophages
|
tissue: blood
|
Gene expression data from rat blood macrophages activated during 3 days on fibrinogen coated PTFE
Macrophages_C2-3
|
| Sample_geo_accession | GSM540899
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540899/suppl/GSM540899.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540900 | GPL1355 |
|
FBR macrophages from 3-days implants, biological rep1
|
FBR macrophages from 3-days implants
|
tissue: foreign body reaction
|
Gene expression data from freshly isolated macrophages from 3-days implants in rats
Macrophages_C3-1
|
| Sample_geo_accession | GSM540900
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540900/suppl/GSM540900.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540901 | GPL1355 |
|
FBR macrophages from 3-days implants, biological rep2
|
FBR macrophages from 3-days implants
|
tissue: foreign body reaction
|
Gene expression data from freshly isolated macrophages from 3-days implants in rats
Macrophages_C3-2
|
| Sample_geo_accession | GSM540901
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540901/suppl/GSM540901.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
|
GSM540902 | GPL1355 |
|
FBR macrophages from 3-days implants, biological rep3
|
FBR macrophages from 3-days implants
|
tissue: foreign body reaction
|
Gene expression data from freshly isolated macrophages from 3-days implants in rats
Macrophages_C3-3
|
| Sample_geo_accession | GSM540902
| | Sample_status | Public on Jan 23 2013
| | Sample_submission_date | May 05 2010
| | Sample_last_update_date | Jan 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr to Rat 230 2.0 GeneChips. Arrays were washed and stained with streptavidin-phycoerythrin, biotinylated anti-streptavidin.
| | Sample_scan_protocol | GeneChips were scanned with an Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | Arrays were analyzed independently of each other with Microarray Suite version 5.0 (MAS 5.0). Only probe sets that were present (p<0.04) in all 3 arrays representing 1 sample type were retained for further multiple array data analysis. In the comparison analysis, the Robust Multichip Analysis (RMA) algorithm was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Lindsay,,Mesure
| | Sample_contact_email | lindsay.mesure@med.kuleuven.be
| | Sample_contact_laboratory | Experimental Cardiac Surgery
| | Sample_contact_department | Cardiovascular Diseases
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Minderbroedersstraat 17
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM540nnn/GSM540902/suppl/GSM540902.CEL.gz
| | Sample_series_id | GSE21682
| | Sample_data_row_count | 31099
| | |
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