Search results for the GEO ID: GSE21738  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM542243 | GPL1261 |
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Control WT_jejunum_rep1
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Wild type control
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tissue: jejunum
genotype/variation: Wild type
age: 3 weeks
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Gene expression data from a wild type control mouse.
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| Sample_geo_accession | GSM542243
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | May 07 2010
| | Sample_last_update_date | May 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | The transgenic smDicer KO mice were generated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using the mirVana miRNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Omicsoft Array Studio software and normalized using the RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Seungil,,Ro
| | Sample_contact_email | sro@medicine.nevada.edu
| | Sample_contact_phone | 775-784-1462
| | Sample_contact_fax | 775-784-6903
| | Sample_contact_laboratory | Molecular Biology
| | Sample_contact_department | Physiology and Cell biology
| | Sample_contact_institute | University of Nevada School of Medicine
| | Sample_contact_address | 1664 N. Virginia St.
| | Sample_contact_city | Reno
| | Sample_contact_state | NV
| | Sample_contact_zip/postal_code | 89557
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.medicine.nevada.edu/physio/facro.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM542nnn/GSM542243/suppl/GSM542243.CEL.gz
| | Sample_series_id | GSE21738
| | Sample_data_row_count | 45101
| | |
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GSM542244 | GPL1261 |
|
Control WT_jejunum_rep2
|
Wild type control
|
tissue: jejunum
genotype/variation: Wild type
age: 3 weeks
|
Gene expression data from a wild type control mouse.
|
| Sample_geo_accession | GSM542244
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | May 07 2010
| | Sample_last_update_date | May 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | The transgenic smDicer KO mice were generated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using the mirVana miRNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Omicsoft Array Studio software and normalized using the RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Seungil,,Ro
| | Sample_contact_email | sro@medicine.nevada.edu
| | Sample_contact_phone | 775-784-1462
| | Sample_contact_fax | 775-784-6903
| | Sample_contact_laboratory | Molecular Biology
| | Sample_contact_department | Physiology and Cell biology
| | Sample_contact_institute | University of Nevada School of Medicine
| | Sample_contact_address | 1664 N. Virginia St.
| | Sample_contact_city | Reno
| | Sample_contact_state | NV
| | Sample_contact_zip/postal_code | 89557
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.medicine.nevada.edu/physio/facro.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM542nnn/GSM542244/suppl/GSM542244.CEL.gz
| | Sample_series_id | GSE21738
| | Sample_data_row_count | 45101
| | |
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GSM542245 | GPL1261 |
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smDicer KO_jejunum_rep1
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Smooth muscle-specific Dicer knockout
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tissue: jejunum
genotype/variation: Knockout
age: 3 weeks
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Gene expression data from a smDicer knockout mouse.
|
| Sample_geo_accession | GSM542245
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | May 07 2010
| | Sample_last_update_date | May 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | The transgenic smDicer KO mice were generated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using the mirVana miRNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Omicsoft Array Studio software and normalized using the RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Seungil,,Ro
| | Sample_contact_email | sro@medicine.nevada.edu
| | Sample_contact_phone | 775-784-1462
| | Sample_contact_fax | 775-784-6903
| | Sample_contact_laboratory | Molecular Biology
| | Sample_contact_department | Physiology and Cell biology
| | Sample_contact_institute | University of Nevada School of Medicine
| | Sample_contact_address | 1664 N. Virginia St.
| | Sample_contact_city | Reno
| | Sample_contact_state | NV
| | Sample_contact_zip/postal_code | 89557
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.medicine.nevada.edu/physio/facro.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM542nnn/GSM542245/suppl/GSM542245.CEL.gz
| | Sample_series_id | GSE21738
| | Sample_data_row_count | 45101
| | |
|
GSM542246 | GPL1261 |
|
smDicer KO_jejunum_rep2
|
Smooth muscle-specific Dicer knockout
|
tissue: jejunum
genotype/variation: Knockout
age: 3 weeks
|
Gene expression data from a smDicer knockout mouse.
|
| Sample_geo_accession | GSM542246
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | May 07 2010
| | Sample_last_update_date | May 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | The transgenic smDicer KO mice were generated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using the mirVana miRNA isolation kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Omicsoft Array Studio software and normalized using the RMA algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Seungil,,Ro
| | Sample_contact_email | sro@medicine.nevada.edu
| | Sample_contact_phone | 775-784-1462
| | Sample_contact_fax | 775-784-6903
| | Sample_contact_laboratory | Molecular Biology
| | Sample_contact_department | Physiology and Cell biology
| | Sample_contact_institute | University of Nevada School of Medicine
| | Sample_contact_address | 1664 N. Virginia St.
| | Sample_contact_city | Reno
| | Sample_contact_state | NV
| | Sample_contact_zip/postal_code | 89557
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.medicine.nevada.edu/physio/facro.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM542nnn/GSM542246/suppl/GSM542246.CEL.gz
| | Sample_series_id | GSE21738
| | Sample_data_row_count | 45101
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