Search results for the GEO ID: GSE21842  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM543489 | GPL1261 |
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LSK cells from wild type mouse rep1
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: Wild type
|
Gene expression data from LSK wild type mouse
|
| Sample_geo_accession | GSM543489
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543489/suppl/GSM543489.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
| | |
|
GSM543490 | GPL1261 |
|
LSK cells from wild type mouse rep2
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: Wild type
|
Gene expression data from LSK wild type mouse
|
| Sample_geo_accession | GSM543490
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543490/suppl/GSM543490.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
| | |
|
GSM543491 | GPL1261 |
|
LSK cells from wild type mouse rep3
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: Wild type
|
Gene expression data from LSK wild type mouse
|
| Sample_geo_accession | GSM543491
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543491/suppl/GSM543491.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
| | |
|
GSM543492 | GPL1261 |
|
LSK cells from wild type mouse rep4
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: Wild type
|
Gene expression data from LSK wild type mouse
|
| Sample_geo_accession | GSM543492
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543492/suppl/GSM543492.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
| | |
|
GSM543493 | GPL1261 |
|
LSK cells from heterozygous JAK2V617F mouse rep1
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: mutant JAK2V617F (heterozygous)
|
Gene expression data from LSK cells from Jak2V617F mouse
|
| Sample_geo_accession | GSM543493
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543493/suppl/GSM543493.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
| | |
|
GSM543494 | GPL1261 |
|
LSK cells from heterozygous JAK2V617F mouse rep2
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: mutant JAK2V617F (heterozygous)
|
Gene expression data from LSK cells from Jak2V617F mouse
|
| Sample_geo_accession | GSM543494
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543494/suppl/GSM543494.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
| | |
|
GSM543495 | GPL1261 |
|
LSK cells from heterozygous JAK2V617F mouse rep3
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: mutant JAK2V617F (heterozygous)
|
Gene expression data from LSK cells from Jak2V617F mouse
|
| Sample_geo_accession | GSM543495
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543495/suppl/GSM543495.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
| | |
|
GSM543496 | GPL1261 |
|
LSK cells from heterozygous JAK2V617F mouse rep4
|
Lineagelow Sca1+cKit high Cells
|
strain: C57BL/6
cell type: Lineagelow Sca1+cKit high Cells
genotype/variation: mutant JAK2V617F (heterozygous)
|
Gene expression data from LSK cells from Jak2V617F mouse
|
| Sample_geo_accession | GSM543496
| | Sample_status | Public on May 15 2010
| | Sample_submission_date | May 14 2010
| | Sample_last_update_date | May 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The cells were treated with RLT lysis buffer (Qiagen) containing beta-mercaptoethanol to stabilize RNA.
| | Sample_growth_protocol_ch1 | LKS cells were isolated from JAK2V617F or WT mice using high-speed multiparameter flow cytometry.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Qiagen RNeasy Micro Kit according to manufacturers instruction. The RNA was amplified using a linear amplification protocol (Nugen Ovation V2 amplification system)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGen Ovation Biotin labeling system
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Fatima,,Al-Shahrour
| | Sample_contact_email | shahrour@broadinstitute.org
| | Sample_contact_department | Cancer program
| | Sample_contact_institute | Broad Institute of MIT and Harvard
| | Sample_contact_address | 7 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543496/suppl/GSM543496.CEL.gz
| | Sample_series_id | GSE21842
| | Sample_data_row_count | 45101
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