Search results for the GEO ID: GSE21863  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM543809 | GPL1261 |
|
retina_wt/wt_rep1
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retina at age PN40
|
strain: BALB/c AJ
tissue: retina
genotype: wt/wt
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM543809
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | May 17 2010
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2008, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Affymetrix 430.2 mouse GeneChips and the arrays were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543809/suppl/GSM543809.CEL.gz
| | Sample_series_id | GSE21863
| | Sample_data_row_count | 45101
| | |
|
GSM543810 | GPL1261 |
|
retina_wt/wt_rep2
|
retina at age PN40
|
strain: BALB/c AJ
tissue: retina
genotype: wt/wt
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM543810
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | May 17 2010
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2008, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Affymetrix 430.2 mouse GeneChips and the arrays were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543810/suppl/GSM543810.CEL.gz
| | Sample_series_id | GSE21863
| | Sample_data_row_count | 45101
| | |
|
GSM543811 | GPL1261 |
|
retina_wt/wt_rep3
|
retina at age PN40
|
strain: BALB/c AJ
tissue: retina
genotype: wt/wt
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM543811
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | May 17 2010
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2008, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Affymetrix 430.2 mouse GeneChips and the arrays were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543811/suppl/GSM543811.CEL.gz
| | Sample_series_id | GSE21863
| | Sample_data_row_count | 45101
| | |
|
GSM543812 | GPL1261 |
|
retina_ko/ko_rep1
|
retina at age PN40
|
strain: BALB/c AJ
tissue: retina
genotype: ko/ko
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM543812
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | May 17 2010
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2008, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Affymetrix 430.2 mouse GeneChips and the arrays were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543812/suppl/GSM543812.CEL.gz
| | Sample_series_id | GSE21863
| | Sample_data_row_count | 45101
| | |
|
GSM543813 | GPL1261 |
|
retina_ko/ko_rep2
|
retina at age PN40
|
strain: BALB/c AJ
tissue: retina
genotype: ko/ko
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM543813
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | May 17 2010
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2008, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Affymetrix 430.2 mouse GeneChips and the arrays were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543813/suppl/GSM543813.CEL.gz
| | Sample_series_id | GSE21863
| | Sample_data_row_count | 45101
| | |
|
GSM543814 | GPL1261 |
|
retina_ko/ko_rep3
|
retina at age PN40
|
strain: BALB/c AJ
tissue: retina
genotype: ko/ko
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM543814
| | Sample_status | Public on Sep 12 2011
| | Sample_submission_date | May 17 2010
| | Sample_last_update_date | Sep 12 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2008, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Affymetrix 430.2 mouse GeneChips and the arrays were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM543nnn/GSM543814/suppl/GSM543814.CEL.gz
| | Sample_series_id | GSE21863
| | Sample_data_row_count | 45101
| | |
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