Search results for the GEO ID: GSE21909  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM545016 | GPL201 |
|
24hr pre-treatment monocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545016
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545016/suppl/GSM545016.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545017 | GPL201 |
|
24hr pre-treatment monocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545017
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545017/suppl/GSM545017.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545018 | GPL201 |
|
24hr pre-treatment monocytes 2208
|
Healthy Volunteers
|
id: 2208
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545018
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545018/suppl/GSM545018.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545019 | GPL201 |
|
24hr pre-treatment monocytes 2209
|
Healthy Volunteers
|
id: 2209
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545019
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545019/suppl/GSM545019.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545020 | GPL201 |
|
24hr pre-treatment monocytes 2204
|
Healthy Volunteers
|
id: 2204
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545020
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545020/suppl/GSM545020.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545021 | GPL201 |
|
24hr pre-treatment monocytes 2205
|
Healthy Volunteers
|
id: 2205
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545021
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545021/suppl/GSM545021.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545022 | GPL201 |
|
24hr pre-treatment monocytes 2203
|
Healthy Volunteers
|
id: 2203
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545022
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545022/suppl/GSM545022.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545023 | GPL201 |
|
24hr pre-treatment monocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545023
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545023/suppl/GSM545023.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545024 | GPL201 |
|
24hr pre-treatment monocytes 2201
|
Healthy Volunteers
|
id: 2201
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545024
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545024/suppl/GSM545024.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545025 | GPL201 |
|
6hrs of saline monocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Monocytes
treatment group: 6hrs of saline
|
6hrs of saline
|
| Sample_geo_accession | GSM545025
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545025/suppl/GSM545025.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545026 | GPL201 |
|
6hrs of saline monocytes 2209
|
Healthy Volunteers
|
id: 2209
disease status: healthy volunteers
cell type: Monocytes
treatment group: 6hrs of saline
|
6hrs of saline
|
| Sample_geo_accession | GSM545026
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545026/suppl/GSM545026.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545027 | GPL201 |
|
6hrs of saline monocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Monocytes
treatment group: 6hrs of saline
|
6hrs of saline
|
| Sample_geo_accession | GSM545027
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545027/suppl/GSM545027.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545028 | GPL201 |
|
12hrs saline +6hr LPS monocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545028
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545028/suppl/GSM545028.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545029 | GPL201 |
|
12hrs saline +6hr LPS monocytes 2208
|
Healthy Volunteers
|
id: 2208
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545029
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545029/suppl/GSM545029.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545030 | GPL201 |
|
12hrs saline +6hr LPS monocytes 2209
|
Healthy Volunteers
|
id: 2209
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545030
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545030/suppl/GSM545030.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545031 | GPL201 |
|
12hrs saline +6hr LPS monocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545031
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545031/suppl/GSM545031.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545032 | GPL201 |
|
24hr post saline+LPS monocytes 931
|
Healthy Volunteers
|
id: 931
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545032
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545032/suppl/GSM545032.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545033 | GPL201 |
|
24hr post saline+LPS monocytes 2209
|
Healthy Volunteers
|
id: 2209
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545033
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545033/suppl/GSM545033.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545034 | GPL201 |
|
24hr post saline+LPS monocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545034
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545034/suppl/GSM545034.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545035 | GPL201 |
|
24hr post saline+LPS monocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545035
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545035/suppl/GSM545035.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545036 | GPL201 |
|
6hr Cortisol monocytes 2206
|
Healthy Volunteers
|
id: 2206
disease status: healthy volunteers
cell type: Monocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545036
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545036/suppl/GSM545036.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545037 | GPL201 |
|
6hr Cortisol monocytes 2205
|
Healthy Volunteers
|
id: 2205
disease status: healthy volunteers
cell type: Monocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545037
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545037/suppl/GSM545037.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545038 | GPL201 |
|
6hr Cortisol monocytes 2203
|
Healthy Volunteers
|
id: 2203
disease status: healthy volunteers
cell type: Monocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545038
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545038/suppl/GSM545038.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545039 | GPL201 |
|
6hr Cortisol monocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Monocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545039
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545039/suppl/GSM545039.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545040 | GPL201 |
|
12hr Cortisol +6hr LPS monocytes 2212
|
Healthy Volunteers
|
id: 2212
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545040
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545040/suppl/GSM545040.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545041 | GPL201 |
|
12hr Cortisol +6hr LPS monocytes 2206
|
Healthy Volunteers
|
id: 2206
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545041
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545041/suppl/GSM545041.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545042 | GPL201 |
|
12hr Cortisol +6hr LPS monocytes 2204
|
Healthy Volunteers
|
id: 2204
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545042
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545042/suppl/GSM545042.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545043 | GPL201 |
|
12hr Cortisol +6hr LPS monocytes 2205
|
Healthy Volunteers
|
id: 2205
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545043
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545043/suppl/GSM545043.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545044 | GPL201 |
|
12hr Cortisol +6hr LPS monocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545044
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545044/suppl/GSM545044.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545045 | GPL201 |
|
12hr Cortisol +6hr LPS monocytes 2201
|
Healthy Volunteers
|
id: 2201
disease status: healthy volunteers
cell type: Monocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545045
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545045/suppl/GSM545045.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545046 | GPL201 |
|
24hr post Cortisol+LPS monocytes 2206
|
Healthy Volunteers
|
id: 2206
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545046
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545046/suppl/GSM545046.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545047 | GPL201 |
|
24hr post Cortisol+LPS monocytes 2204
|
Healthy Volunteers
|
id: 2204
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545047
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545047/suppl/GSM545047.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545048 | GPL201 |
|
24hr post Cortisol+LPS monocytes 2205
|
Healthy Volunteers
|
id: 2205
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545048
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545048/suppl/GSM545048.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545049 | GPL201 |
|
24hr post Cortisol+LPS monocytes 2203
|
Healthy Volunteers
|
id: 2203
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545049
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545049/suppl/GSM545049.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545050 | GPL201 |
|
24hr post Cortisol+LPS monocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545050
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545050/suppl/GSM545050.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545051 | GPL201 |
|
24hr post Cortisol+LPS monocytes 2201
|
Healthy Volunteers
|
id: 2201
disease status: healthy volunteers
cell type: Monocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545051
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545051/suppl/GSM545051.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545052 | GPL201 |
|
24hr pre-treatment leukocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545052
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545052/suppl/GSM545052.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545053 | GPL201 |
|
24hr pre-treatment leukocytes 927
|
Healthy Volunteers
|
id: 927
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545053
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545053/suppl/GSM545053.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545054 | GPL201 |
|
24hr pre-treatment leukocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545054
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545054/suppl/GSM545054.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545055 | GPL201 |
|
24hr pre-treatment leukocytes 2212
|
Healthy Volunteers
|
id: 2212
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545055
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545055/suppl/GSM545055.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545056 | GPL201 |
|
24hr pre-treatment leukocytes 2206
|
Healthy Volunteers
|
id: 2206
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545056
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545056/suppl/GSM545056.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545057 | GPL201 |
|
24hr pre-treatment leukocytes 2205
|
Healthy Volunteers
|
id: 2205
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545057
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545057/suppl/GSM545057.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545058 | GPL201 |
|
24hr pre-treatment leukocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545058
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545058/suppl/GSM545058.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545059 | GPL201 |
|
24hr pre-treatment leukocytes 2201
|
Healthy Volunteers
|
id: 2201
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545059
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545059/suppl/GSM545059.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545060 | GPL201 |
|
24hr pre-treatment leukocytes 2203
|
Healthy Volunteers
|
id: 2203
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr pre-treatment
|
24hr pre-treatment
|
| Sample_geo_accession | GSM545060
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545060/suppl/GSM545060.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545061 | GPL201 |
|
6hrs of saline leukocytes 2208
|
Healthy Volunteers
|
id: 2208
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hrs of saline
|
6hrs of saline
|
| Sample_geo_accession | GSM545061
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545061/suppl/GSM545061.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545062 | GPL201 |
|
6hrs of saline leukocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hrs of saline
|
6hrs of saline
|
| Sample_geo_accession | GSM545062
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545062/suppl/GSM545062.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545063 | GPL201 |
|
6hrs of saline leukocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hrs of saline
|
6hrs of saline
|
| Sample_geo_accession | GSM545063
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545063/suppl/GSM545063.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545064 | GPL201 |
|
12hrs saline +6hr LPS leukocytes 2208
|
Healthy Volunteers
|
id: 2208
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545064
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545064/suppl/GSM545064.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545065 | GPL201 |
|
12hrs saline +6hr LPS leukocytes 921
|
Healthy Volunteers
|
id: 921
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545065
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545065/suppl/GSM545065.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545066 | GPL201 |
|
12hrs saline +6hr LPS leukocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545066
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545066/suppl/GSM545066.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545067 | GPL201 |
|
12hrs saline +6hr LPS leukocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hrs saline +6hr LPS
|
12hrs saline +6hr LPS
|
| Sample_geo_accession | GSM545067
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545067/suppl/GSM545067.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545068 | GPL201 |
|
24hr post saline+LPS leukocytes 927
|
Healthy Volunteers
|
id: 927
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545068
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545068/suppl/GSM545068.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545069 | GPL201 |
|
24hr post saline+LPS leukocytes 2209
|
Healthy Volunteers
|
id: 2209
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545069
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545069/suppl/GSM545069.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545070 | GPL201 |
|
24hr post saline+LPS leukocytes 2210
|
Healthy Volunteers
|
id: 2210
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545070
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545070/suppl/GSM545070.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545071 | GPL201 |
|
24hr post saline+LPS leukocytes 2207
|
Healthy Volunteers
|
id: 2207
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post saline+LPS
|
24hr post saline+LPS
|
| Sample_geo_accession | GSM545071
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545071/suppl/GSM545071.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545072 | GPL201 |
|
6hr Cortisol leukocytes 2212
|
Healthy Volunteers
|
id: 2212
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545072
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545072/suppl/GSM545072.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545073 | GPL201 |
|
6hr Cortisol leukocytes 2205
|
Healthy Volunteers
|
id: 2205
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545073
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545073/suppl/GSM545073.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545074 | GPL201 |
|
6hr Cortisol leukocytes 2206
|
Healthy Volunteers
|
id: 2206
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545074
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545074/suppl/GSM545074.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545075 | GPL201 |
|
6hr Cortisol leukocytes 2204
|
Healthy Volunteers
|
id: 2204
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545075
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545075/suppl/GSM545075.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545076 | GPL201 |
|
6hr Cortisol leukocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545076
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545076/suppl/GSM545076.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545077 | GPL201 |
|
6hr Cortisol leukocytes 2203
|
Healthy Volunteers
|
id: 2203
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 6hr Cortisol
|
6hr Cortisol
|
| Sample_geo_accession | GSM545077
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545077/suppl/GSM545077.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545078 | GPL201 |
|
12hr Cortisol +6hr LPS leukocytes 2212
|
Healthy Volunteers
|
id: 2212
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545078
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545078/suppl/GSM545078.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545079 | GPL201 |
|
12hr Cortisol +6hr LPS leukocytes 2205
|
Healthy Volunteers
|
id: 2205
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545079
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545079/suppl/GSM545079.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545080 | GPL201 |
|
12hr Cortisol +6hr LPS leukocytes 2206
|
Healthy Volunteers
|
id: 2206
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545080
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545080/suppl/GSM545080.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545081 | GPL201 |
|
12hr Cortisol +6hr LPS leukocytes 2204
|
Healthy Volunteers
|
id: 2204
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545081
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545081/suppl/GSM545081.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545082 | GPL201 |
|
12hr Cortisol +6hr LPS leukocytes 2201
|
Healthy Volunteers
|
id: 2201
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545082
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545082/suppl/GSM545082.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545083 | GPL201 |
|
12hr Cortisol +6hr LPS leukocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545083
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545083/suppl/GSM545083.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545084 | GPL201 |
|
12hr Cortisol +6hr LPS leukocytes 2203
|
Healthy Volunteers
|
id: 2203
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 12hr Cortisol +6hr LPS
|
12hr Cortisol +6hr LPS
|
| Sample_geo_accession | GSM545084
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545084/suppl/GSM545084.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545085 | GPL201 |
|
24hr post Cortisol+LPS leukocytes 2212
|
Healthy Volunteers
|
id: 2212
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545085
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545085/suppl/GSM545085.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545086 | GPL201 |
|
24hr post Cortisol+LPS leukocytes 2206
|
Healthy Volunteers
|
id: 2206
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545086
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545086/suppl/GSM545086.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545087 | GPL201 |
|
24hr post Cortisol+LPS leukocytes 2204
|
Healthy Volunteers
|
id: 2204
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545087
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545087/suppl/GSM545087.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545088 | GPL201 |
|
24hr post Cortisol+LPS leukocytes 2201
|
Healthy Volunteers
|
id: 2201
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545088
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545088/suppl/GSM545088.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545089 | GPL201 |
|
24hr post Cortisol+LPS leukocytes 2202
|
Healthy Volunteers
|
id: 2202
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545089
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545089/suppl/GSM545089.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
|
GSM545090 | GPL201 |
|
24hr post Cortisol+LPS leukocytes 2203
|
Healthy Volunteers
|
id: 2203
disease status: healthy volunteers
cell type: Leukocytes
treatment group: 24hr post Cortisol+LPS
|
24hr post Cortisol+LPS
|
| Sample_geo_accession | GSM545090
| | Sample_status | Public on May 21 2010
| | Sample_submission_date | May 19 2010
| | Sample_last_update_date | May 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneSpring GX11.0.1 - RMA - baseline transformation, log2 transformation
| | Sample_platform_id | GPL201
| | Sample_contact_name | Stephen,F,Lowry
| | Sample_contact_email | lowrysf@umdnj.edu
| | Sample_contact_phone | 732-235-6096
| | Sample_contact_laboratory | Surgical Sciences
| | Sample_contact_department | Surgery
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 125 Paterson St
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08901
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM545nnn/GSM545090/suppl/GSM545090.CEL.gz
| | Sample_series_id | GSE21909
| | Sample_data_row_count | 8793
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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