Search results for the GEO ID: GSE22038  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM547830 | GPL570 |
|
GRANTA
|
mock treated
|
cell line: GRANTA
|
|
| Sample_geo_accession | GSM547830
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547830/suppl/GSM547830.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547831 | GPL570 |
|
GRANTA_AZA
|
AZA treatment
|
cell line: GRANTA
|
|
| Sample_geo_accession | GSM547831
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547831/suppl/GSM547831.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547832 | GPL570 |
|
GRANTA_AZA+TSA
|
AZA+TSA treatment
|
cell line: GRANTA
|
|
| Sample_geo_accession | GSM547832
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547832/suppl/GSM547832.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547833 | GPL570 |
|
NCEB
|
mock treated
|
cell line: NCEB
|
|
| Sample_geo_accession | GSM547833
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547833/suppl/GSM547833.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547834 | GPL570 |
|
NCEB_AZA
|
AZA treatment
|
cell line: NCEB
|
|
| Sample_geo_accession | GSM547834
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547834/suppl/GSM547834.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547835 | GPL570 |
|
NCEB_AZA+TSA
|
AZA+TSA treatment
|
cell line: NCEB
|
|
| Sample_geo_accession | GSM547835
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547835/suppl/GSM547835.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547836 | GPL570 |
|
UPN1
|
mock treated
|
cell line: UPN1
|
|
| Sample_geo_accession | GSM547836
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547836/suppl/GSM547836.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547837 | GPL570 |
|
UPN1_AZA
|
AZA treatment
|
cell line: UPN1
|
|
| Sample_geo_accession | GSM547837
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547837/suppl/GSM547837.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547838 | GPL570 |
|
UPN1_AZA+TSA
|
AZA+TSA treatment
|
cell line: UPN1
|
|
| Sample_geo_accession | GSM547838
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547838/suppl/GSM547838.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547839 | GPL570 |
|
JEKO
|
mock treated
|
cell line: JEKO
|
|
| Sample_geo_accession | GSM547839
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547839/suppl/GSM547839.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547840 | GPL570 |
|
JEKO_AZA
|
AZA treatment
|
cell line: JEKO
|
|
| Sample_geo_accession | GSM547840
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547840/suppl/GSM547840.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547841 | GPL570 |
|
JEKO_AZA+TSA
|
AZA+TSA treatment
|
cell line: JEKO
|
|
| Sample_geo_accession | GSM547841
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547841/suppl/GSM547841.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547842 | GPL570 |
|
HBL2
|
mock treated
|
cell line: HBL2
|
|
| Sample_geo_accession | GSM547842
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547842/suppl/GSM547842.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547843 | GPL570 |
|
HBL2_AZA
|
AZA treatment
|
cell line: HBL2
|
|
| Sample_geo_accession | GSM547843
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547843/suppl/GSM547843.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547844 | GPL570 |
|
HBL2_AZA+TSA
|
AZA+TSA treatment
|
cell line: HBL2
|
|
| Sample_geo_accession | GSM547844
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547844/suppl/GSM547844.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547845 | GPL570 |
|
Z138
|
mock treated
|
cell line: Z138
|
|
| Sample_geo_accession | GSM547845
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547845/suppl/GSM547845.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547846 | GPL570 |
|
Z138_AZA
|
AZA treatment
|
cell line: Z138
|
|
| Sample_geo_accession | GSM547846
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547846/suppl/GSM547846.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547847 | GPL570 |
|
Z138_AZA+TSA
|
AZA+TSA treatment
|
cell line: Z138
|
|
| Sample_geo_accession | GSM547847
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547847/suppl/GSM547847.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547848 | GPL570 |
|
MAVER
|
mock treated
|
cell line: MAVER
|
|
| Sample_geo_accession | GSM547848
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547848/suppl/GSM547848.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547849 | GPL570 |
|
MAVER_AZA
|
AZA treatment
|
cell line: MAVER
|
|
| Sample_geo_accession | GSM547849
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547849/suppl/GSM547849.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
GSM547850 | GPL570 |
|
MAVER_AZA+TSA
|
AZA+TSA treatment
|
cell line: MAVER
|
|
| Sample_geo_accession | GSM547850
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cell lines was performed using 5-aza-dC (100nM for 72h, Sigma, Steinheim, Germany) and 5-aza-dC (100nM for 72 h) followed by incubation with TSA (300nM the last 24 h, Sigma).
| | Sample_growth_protocol_ch1 | DMEM and RPMI and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HUMAN 133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner GS3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547850/suppl/GSM547850.CEL.gz
| | Sample_series_id | GSE22038
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
