Search results for the GEO ID: GSE22040  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM547860 | GPL1261 |
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somite of PAX3FKHR rep 1
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hypaxial part of the dermomyotome of E9.5 Pax3PAX3-FKHR/GFP interlimb somites of mouse embryo
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tissue: E9.5 interlimb somites
genotype/variation: Pax3PAX3-FKHR/GFP
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Tissue_A_FKHR_1
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| Sample_geo_accession | GSM547860
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547860/suppl/GSM547860.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547861 | GPL1261 |
|
somite of PAX3FKHR rep 2
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hypaxial part of the dermomyotome of E9.5 Pax3PAX3-FKHR/GFP interlimb somites of mouse embryo
|
tissue: E9.5 interlimb somites
genotype/variation: Pax3PAX3-FKHR/GFP
|
Tissue_A_FKHR_2
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| Sample_geo_accession | GSM547861
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547861/suppl/GSM547861.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547862 | GPL1261 |
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somite of PAX3FKHR rep 3
|
hypaxial part of the dermomyotome of E9.5 Pax3PAX3-FKHR/GFP interlimb somites of mouse embryo
|
tissue: E9.5 interlimb somites
genotype/variation: Pax3PAX3-FKHR/GFP
|
Tissue_A_FKHR_3
|
| Sample_geo_accession | GSM547862
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547862/suppl/GSM547862.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547863 | GPL1261 |
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somite of GFP+ rep 1
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hypaxial part of the dermomyotome of E9.5 Pax3GFP/+ interlimb somites of mouse embryo
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tissue: E9.5 interlimb somites
genotype/variation: Pax3GFP/+
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Tissue_A_GFP+_1
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| Sample_geo_accession | GSM547863
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547863/suppl/GSM547863.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547864 | GPL1261 |
|
somite of GFP+ rep 2
|
hypaxial part of the dermomyotome of E9.5 Pax3GFP/+ interlimb somites of mouse embryo
|
tissue: E9.5 interlimb somites
genotype/variation: Pax3GFP/+
|
Tissue_A_GFP+_2
|
| Sample_geo_accession | GSM547864
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547864/suppl/GSM547864.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547865 | GPL1261 |
|
somite of GFP+ rep 3
|
hypaxial part of the dermomyotome of E9.5 Pax3GFP/+ interlimb somites of mouse embryo
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tissue: E9.5 interlimb somites
genotype/variation: Pax3GFP/+
|
Tissue_A_GFP+_3
|
| Sample_geo_accession | GSM547865
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547865/suppl/GSM547865.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547866 | GPL1261 |
|
somite of GFP- rep 1
|
hypaxial part of the dermomyotome of E9.5 interlimb somites of mouse embryo, GFP negative cells
|
tissue: E9.5 interlimb somites
genotype/variation: GFP-
|
Tissue_A_GFP-_1
|
| Sample_geo_accession | GSM547866
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547866/suppl/GSM547866.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547867 | GPL1261 |
|
somite of GFP- rep 2
|
hypaxial part of the dermomyotome of E9.5 interlimb somites of mouse embryo, GFP negative cells
|
tissue: E9.5 interlimb somites
genotype/variation: GFP-
|
Tissue_A_GFP-_2
|
| Sample_geo_accession | GSM547867
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547867/suppl/GSM547867.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
|
GSM547868 | GPL1261 |
|
somite of GFP- rep 3
|
hypaxial part of the dermomyotome of E9.5 interlimb somites of mouse embryo, GFP negative cells
|
tissue: E9.5 interlimb somites
genotype/variation: GFP-
|
Tissue_A_GFP-_3
|
| Sample_geo_accession | GSM547868
| | Sample_status | Public on Dec 01 2010
| | Sample_submission_date | May 28 2010
| | Sample_last_update_date | Nov 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | forelimb buds were dissociated by passage through a 2ml syringue and filtered before the flow cytometry sorting
| | Sample_growth_protocol_ch1 | mouse embryos were dissected in DMEM medium and Pax3-GFP fluorescence was viewed under a microscope
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy micro kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | We used the GeneChip Expression Two-Cycle 3'amplification system (Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse 430_2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalised using the RMA algorithm and significant differences in gene expression were obtained using a LPE statistical test adjusted using the BH multiple correction.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mounia,,lagha
| | Sample_contact_email | mounia.lagha@gmail.com
| | Sample_contact_institute | Institut Pasteur
| | Sample_contact_address | 25 rue du Dr Roux
| | Sample_contact_city | paris
| | Sample_contact_zip/postal_code | 75015
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM547nnn/GSM547868/suppl/GSM547868.CEL.gz
| | Sample_series_id | GSE22040
| | Sample_series_id | GSE22041
| | Sample_data_row_count | 45101
| | |
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