Search results for the GEO ID: GSE22073  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM548796 | GPL1261 |
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Testis, WT, biological replicate 1
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Mouse testis from wild type with C57/BL6 genetic background
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tissue: testis
genotype: C53/BL6
age: 12 weeks
|
Gene expression data
|
| Sample_geo_accession | GSM548796
| | Sample_status | Public on Jun 02 2010
| | Sample_submission_date | Jun 01 2010
| | Sample_last_update_date | Jun 01 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse testes were dissected from 12 week old mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole testes were snap frozen in liquid nitrogen. Total RNA was prepared using Trizol. RNA quality was checked on the Bioanalyser Agilent 2100. All the RNA samples had RIN values between 9.8 and 10.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized using the One-Cycle Target labelling and Control kit (Affymetrix)
| | Sample_hyb_protocol | 15 ug of biotinylated and fragmented cRNA samples were hybridized on to the GeneChip Mouse Genome 430 2.0 Array (Affymetrix) according to manufacturers protocols (Affymetrix)
| | Sample_scan_protocol | GeneChip® Scanner 3000 (GCS 3000)
| | Sample_data_processing | QCs including scale factor, background, noise, spikes and RNA degradation were checked and validated using the yaqcaffy library (http://www.bioconductor.org/packages/2.3/ bioc/ vignettes/yaqcaffy/inst/doc/yaqcaffy.pdf). Affymetrix raw data was generated with GCOS 1.4 (GeneChip operating software, Affymetrix)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Anja,,Nilsen
| | Sample_contact_email | anja.nilsen@rr-research.no
| | Sample_contact_institute | University of Oslo
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM548nnn/GSM548796/suppl/GSM548796_DNA7078-013.CEL.gz
| | Sample_series_id | GSE22073
| | Sample_data_row_count | 45101
| | |
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GSM548797 | GPL1261 |
|
Testis, WT, biological replicate 2
|
Mouse testis from wild type with C57/BL6 genetic background
|
tissue: testis
genotype: C53/BL6
age: 12 weeks
|
Gene expression data
|
| Sample_geo_accession | GSM548797
| | Sample_status | Public on Jun 02 2010
| | Sample_submission_date | Jun 01 2010
| | Sample_last_update_date | Jun 01 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse testes were dissected from 12 week old mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole testes were snap frozen in liquid nitrogen. Total RNA was prepared using Trizol. RNA quality was checked on the Bioanalyser Agilent 2100. All the RNA samples had RIN values between 9.8 and 10.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized using the One-Cycle Target labelling and Control kit (Affymetrix)
| | Sample_hyb_protocol | 15 ug of biotinylated and fragmented cRNA samples were hybridized on to the GeneChip Mouse Genome 430 2.0 Array (Affymetrix) according to manufacturers protocols (Affymetrix)
| | Sample_scan_protocol | GeneChip® Scanner 3000 (GCS 3000)
| | Sample_data_processing | QCs including scale factor, background, noise, spikes and RNA degradation were checked and validated using the yaqcaffy library (http://www.bioconductor.org/packages/2.3/ bioc/ vignettes/yaqcaffy/inst/doc/yaqcaffy.pdf). Affymetrix raw data was generated with GCOS 1.4 (GeneChip operating software, Affymetrix)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Anja,,Nilsen
| | Sample_contact_email | anja.nilsen@rr-research.no
| | Sample_contact_institute | University of Oslo
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM548nnn/GSM548797/suppl/GSM548797_DNA7078-014.CEL.gz
| | Sample_series_id | GSE22073
| | Sample_data_row_count | 45101
| | |
|
GSM548798 | GPL1261 |
|
Testis, WT, biological replicate 3
|
Mouse testis from wild type with C57/BL6 genetic background
|
tissue: testis
genotype: C53/BL6
age: 12 weeks
|
Gene expression data
|
| Sample_geo_accession | GSM548798
| | Sample_status | Public on Jun 02 2010
| | Sample_submission_date | Jun 01 2010
| | Sample_last_update_date | Jun 01 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse testes were dissected from 12 week old mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole testes were snap frozen in liquid nitrogen. Total RNA was prepared using Trizol. RNA quality was checked on the Bioanalyser Agilent 2100. All the RNA samples had RIN values between 9.8 and 10.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized using the One-Cycle Target labelling and Control kit (Affymetrix)
| | Sample_hyb_protocol | 15 ug of biotinylated and fragmented cRNA samples were hybridized on to the GeneChip Mouse Genome 430 2.0 Array (Affymetrix) according to manufacturers protocols (Affymetrix)
| | Sample_scan_protocol | GeneChip® Scanner 3000 (GCS 3000)
| | Sample_data_processing | QCs including scale factor, background, noise, spikes and RNA degradation were checked and validated using the yaqcaffy library (http://www.bioconductor.org/packages/2.3/ bioc/ vignettes/yaqcaffy/inst/doc/yaqcaffy.pdf). Affymetrix raw data was generated with GCOS 1.4 (GeneChip operating software, Affymetrix)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Anja,,Nilsen
| | Sample_contact_email | anja.nilsen@rr-research.no
| | Sample_contact_institute | University of Oslo
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM548nnn/GSM548798/suppl/GSM548798_DNA7078-015.CEL.gz
| | Sample_series_id | GSE22073
| | Sample_data_row_count | 45101
| | |
|
GSM548799 | GPL1261 |
|
Testis, Alkbh1 KO, biological replicate 1
|
Mouse testis from Alkbh1 knock-out with C57/BL6 genetic background
|
tissue: testis
genotype: C53/BL6, Alkbh1-/-
age: 12 weeks
|
Gene expression data
|
| Sample_geo_accession | GSM548799
| | Sample_status | Public on Jun 02 2010
| | Sample_submission_date | Jun 01 2010
| | Sample_last_update_date | Jun 01 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse testes were dissected from 12 week old mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole testes were snap frozen in liquid nitrogen. Total RNA was prepared using Trizol. RNA quality was checked on the Bioanalyser Agilent 2100. All the RNA samples had RIN values between 9.8 and 10.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized using the One-Cycle Target labelling and Control kit (Affymetrix)
| | Sample_hyb_protocol | 15 ug of biotinylated and fragmented cRNA samples were hybridized on to the GeneChip Mouse Genome 430 2.0 Array (Affymetrix) according to manufacturers protocols (Affymetrix)
| | Sample_scan_protocol | GeneChip® Scanner 3000 (GCS 3000)
| | Sample_data_processing | QCs including scale factor, background, noise, spikes and RNA degradation were checked and validated using the yaqcaffy library (http://www.bioconductor.org/packages/2.3/ bioc/ vignettes/yaqcaffy/inst/doc/yaqcaffy.pdf). Affymetrix raw data was generated with GCOS 1.4 (GeneChip operating software, Affymetrix)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Anja,,Nilsen
| | Sample_contact_email | anja.nilsen@rr-research.no
| | Sample_contact_institute | University of Oslo
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM548nnn/GSM548799/suppl/GSM548799_DNA7078-016.CEL.gz
| | Sample_series_id | GSE22073
| | Sample_data_row_count | 45101
| | |
|
GSM548800 | GPL1261 |
|
Testis, Alkbh1 KO, biological replicate 2
|
Mouse testis from Alkbh1 knock-out with C57/BL6 genetic background
|
tissue: testis
genotype: C53/BL6, Alkbh1-/-
age: 12 weeks
|
Gene expression data
|
| Sample_geo_accession | GSM548800
| | Sample_status | Public on Jun 02 2010
| | Sample_submission_date | Jun 01 2010
| | Sample_last_update_date | Jun 01 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse testes were dissected from 12 week old mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole testes were snap frozen in liquid nitrogen. Total RNA was prepared using Trizol. RNA quality was checked on the Bioanalyser Agilent 2100. All the RNA samples had RIN values between 9.8 and 10.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized using the One-Cycle Target labelling and Control kit (Affymetrix)
| | Sample_hyb_protocol | 15 ug of biotinylated and fragmented cRNA samples were hybridized on to the GeneChip Mouse Genome 430 2.0 Array (Affymetrix) according to manufacturers protocols (Affymetrix)
| | Sample_scan_protocol | GeneChip® Scanner 3000 (GCS 3000)
| | Sample_data_processing | QCs including scale factor, background, noise, spikes and RNA degradation were checked and validated using the yaqcaffy library (http://www.bioconductor.org/packages/2.3/ bioc/ vignettes/yaqcaffy/inst/doc/yaqcaffy.pdf). Affymetrix raw data was generated with GCOS 1.4 (GeneChip operating software, Affymetrix)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Anja,,Nilsen
| | Sample_contact_email | anja.nilsen@rr-research.no
| | Sample_contact_institute | University of Oslo
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM548nnn/GSM548800/suppl/GSM548800_DNA7078-017.CEL.gz
| | Sample_series_id | GSE22073
| | Sample_data_row_count | 45101
| | |
|
GSM548801 | GPL1261 |
|
Testis, Alkbh1 KO, biological replicate 3
|
Mouse testis from Alkbh1 knock-out with C57/BL6 genetic background
|
tissue: testis
genotype: C53/BL6, Alkbh1-/-
age: 12 weeks
|
Gene expression data
|
| Sample_geo_accession | GSM548801
| | Sample_status | Public on Jun 02 2010
| | Sample_submission_date | Jun 01 2010
| | Sample_last_update_date | Jun 01 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse testes were dissected from 12 week old mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole testes were snap frozen in liquid nitrogen. Total RNA was prepared using Trizol. RNA quality was checked on the Bioanalyser Agilent 2100. All the RNA samples had RIN values between 9.8 and 10.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized using the One-Cycle Target labelling and Control kit (Affymetrix)
| | Sample_hyb_protocol | 15 ug of biotinylated and fragmented cRNA samples were hybridized on to the GeneChip Mouse Genome 430 2.0 Array (Affymetrix) according to manufacturers protocols (Affymetrix)
| | Sample_scan_protocol | GeneChip® Scanner 3000 (GCS 3000)
| | Sample_data_processing | QCs including scale factor, background, noise, spikes and RNA degradation were checked and validated using the yaqcaffy library (http://www.bioconductor.org/packages/2.3/ bioc/ vignettes/yaqcaffy/inst/doc/yaqcaffy.pdf). Affymetrix raw data was generated with GCOS 1.4 (GeneChip operating software, Affymetrix)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Anja,,Nilsen
| | Sample_contact_email | anja.nilsen@rr-research.no
| | Sample_contact_institute | University of Oslo
| | Sample_contact_address | Sognsvannsveien 20
| | Sample_contact_city | Oslo
| | Sample_contact_zip/postal_code | 0027
| | Sample_contact_country | Norway
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM548nnn/GSM548801/suppl/GSM548801_DNA7078-018.CEL.gz
| | Sample_series_id | GSE22073
| | Sample_data_row_count | 45101
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