Search results for the GEO ID: GSE22150  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM550934 | GPL1261 |
|
Vehicle- treated rep1
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550934
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550934/suppl/GSM550934.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
| | |
|
GSM550935 | GPL1261 |
|
Vehicle- treated rep2
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550935
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550935/suppl/GSM550935.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
| | |
|
GSM550936 | GPL1261 |
|
Vehicle- treated rep3
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550936
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550936/suppl/GSM550936.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
| | |
|
GSM550937 | GPL1261 |
|
Vehicle- treated rep4
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550937
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550937/suppl/GSM550937.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
| | |
|
GSM550938 | GPL1261 |
|
SKI606-treated rep1
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550938
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SKI-606 was formulated in 0.5% methocellulose and 0.4% Tween 80 and administered by oral gavage at 100 mg/kg.
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550938/suppl/GSM550938.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
| | |
|
GSM550939 | GPL1261 |
|
SKI606-treated rep2
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550939
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SKI-606 was formulated in 0.5% methocellulose and 0.4% Tween 80 and administered by oral gavage at 100 mg/kg.
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550939/suppl/GSM550939.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
| | |
|
GSM550940 | GPL1261 |
|
SKI606-treated rep3
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550940
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SKI-606 was formulated in 0.5% methocellulose and 0.4% Tween 80 and administered by oral gavage at 100 mg/kg.
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550940/suppl/GSM550940.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
| | |
|
GSM550941 | GPL1261 |
|
SKI606-treated rep4
|
mammary tissue from transgenic mouse line
|
genotype: MMTV-PyMT
strain: FVB/N-Tg(MMTV-PyVT)634Mul/J
tissue: mammary
|
|
| Sample_geo_accession | GSM550941
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jun 04 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SKI-606 was formulated in 0.5% methocellulose and 0.4% Tween 80 and administered by oral gavage at 100 mg/kg.
| | Sample_growth_protocol_ch1 | Tumors were detected in female mice by manual palpation and measured with the use of calipers.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the mirVana miRNA Isolation Kit (Ambion/Invitrogen) according to the manufacturer’s instructions. 8 ng of total RNA from each mouse was reverse transcribed into cDNA by using iSCRIPT cDNA Synthesis kit (Bio-Rad Laboratories) on a Peltier Thermal Cycler (MJ Research).
| | Sample_label_ch1 | streptavidin Cy3
| | Sample_label_protocol_ch1 | As recommended by Affymetrix
| | Sample_hyb_protocol | As recommended by Affymetrix
| | Sample_scan_protocol | As suggested by Affymetrix using the Affymetrix scanner
| | Sample_data_processing | Data less than 0.01 set to 0.01. Per chip, Normalized to 50th Percentile, Per Gene Normalized to Median.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Roy,M,Williams
| | Sample_contact_email | royw@burnham.org
| | Sample_contact_department | Bioinformatics Shared Resource
| | Sample_contact_institute | Burnham Institute
| | Sample_contact_address | 10901 North Torrey Pines Road
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM550nnn/GSM550941/suppl/GSM550941.cel.gz
| | Sample_series_id | GSE22150
| | Sample_data_row_count | 45101
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