Search results for the GEO ID: GSE22183  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM552354 | GPL570 |
|
AGS - 37 cell line study
|
gastric cancer cell line
|
cell line: AGS
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552354
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552354/suppl/GSM552354.CEL.gz
| | Sample_relation | Reanalysis of: GSM387717
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552355 | GPL570 |
|
AZ521 - 37 cell line study
|
gastric cancer cell line
|
cell line: AZ521
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552355
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552355/suppl/GSM552355.CEL.gz
| | Sample_relation | Reanalysis of: GSM387720
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552356 | GPL570 |
|
CLS145 - 37 cell line study
|
gastric cancer cell line
|
cell line: CLS145
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552356
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552356/suppl/GSM552356.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552357 | GPL570 |
|
Fu97 - 37 cell line study
|
gastric cancer cell line
|
cell line: Fu97
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552357
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552357/suppl/GSM552357.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552358 | GPL570 |
|
HGC27 - 37 cell line study
|
gastric cancer cell line
|
cell line: HGC27
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552358
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552358/suppl/GSM552358.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552359 | GPL570 |
|
Hs746T - 37 cell line study
|
gastric cancer cell line
|
cell line: Hs746T
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552359
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552359/suppl/GSM552359.CEL.gz
| | Sample_relation | Reanalysis of: GSM387722
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552360 | GPL570 |
|
IM95 - 37 cell line study
|
gastric cancer cell line
|
cell line: IM95
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552360
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552360/suppl/GSM552360.CEL.gz
| | Sample_relation | Reanalysis of: GSM387723
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552361 | GPL570 |
|
Ist1 - 37 cell line study
|
gastric cancer cell line
|
cell line: Ist1
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552361
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552361/suppl/GSM552361.CEL.gz
| | Sample_relation | Reanalysis of: GSM387724
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552362 | GPL570 |
|
KatoIII - 37 cell line study
|
gastric cancer cell line
|
cell line: KatoIII
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552362
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552362/suppl/GSM552362.CEL.gz
| | Sample_relation | Reanalysis of: GSM387725
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552363 | GPL570 |
|
MKN1 - 37 cell line study
|
gastric cancer cell line
|
cell line: MKN1
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552363
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552363/suppl/GSM552363.CEL.gz
| | Sample_relation | Reanalysis of: GSM387726
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552364 | GPL570 |
|
MKN45 - 37 cell line study
|
gastric cancer cell line
|
cell line: MKN45
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552364
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552364/suppl/GSM552364.CEL.gz
| | Sample_relation | Reanalysis of: GSM387730
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552365 | GPL570 |
|
MKN7 - 37 cell line study
|
gastric cancer cell line
|
cell line: MKN7
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552365
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552365/suppl/GSM552365.CEL.gz
| | Sample_relation | Reanalysis of: GSM387731
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552366 | GPL570 |
|
NCI-N87 - 37 cell line study
|
gastric cancer cell line
|
cell line: NCI-N87
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552366
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552366/suppl/GSM552366.CEL.gz
| | Sample_relation | Reanalysis of: GSM387735
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552367 | GPL570 |
|
NUGC3 - 37 cell line study
|
gastric cancer cell line
|
cell line: NUGC3
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552367
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552367/suppl/GSM552367.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552368 | GPL570 |
|
NUGC4 - 37 cell line study
|
gastric cancer cell line
|
cell line: NUGC4
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552368
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552368/suppl/GSM552368.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552369 | GPL570 |
|
OCUM1 - 37 cell line study
|
gastric cancer cell line
|
cell line: OCUM1
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552369
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552369/suppl/GSM552369.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552370 | GPL570 |
|
RerfGC1B - 37 cell line study
|
gastric cancer cell line
|
cell line: RerfGC1B
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552370
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552370/suppl/GSM552370.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552371 | GPL570 |
|
SCH - 37 cell line study
|
gastric cancer cell line
|
cell line: SCH
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552371
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552371/suppl/GSM552371.CEL.gz
| | Sample_relation | Reanalysis of: GSM387736
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552372 | GPL570 |
|
SNU1 - 37 cell line study
|
gastric cancer cell line
|
cell line: SNU1
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552372
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552372/suppl/GSM552372.CEL.gz
| | Sample_relation | Reanalysis of: GSM387737
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552373 | GPL570 |
|
SNU16 - 37 cell line study
|
gastric cancer cell line
|
cell line: SNU16
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552373
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552373/suppl/GSM552373.CEL.gz
| | Sample_relation | Reanalysis of: GSM387738
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552374 | GPL570 |
|
SNU5 - 37 cell line study
|
gastric cancer cell line
|
cell line: SNU5
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552374
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552374/suppl/GSM552374.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552375 | GPL570 |
|
SNU719 - 37 cell line study
|
gastric cancer cell line
|
cell line: SNU719
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552375
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552375/suppl/GSM552375.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552376 | GPL570 |
|
Takigawa - 37 cell line study
|
gastric cancer cell line
|
cell line: Takigawa
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552376
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552376/suppl/GSM552376.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552377 | GPL570 |
|
TMK1 - 37 cell line study
|
gastric cancer cell line
|
cell line: TMK1
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552377
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552377/suppl/GSM552377.CEL.gz
| | Sample_relation | Reanalysis of: GSM387740
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552378 | GPL570 |
|
YCC1 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC1
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552378
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552378/suppl/GSM552378.CEL.gz
| | Sample_relation | Reanalysis of: GSM387742
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552379 | GPL570 |
|
YCC10 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC10
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552379
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552379/suppl/GSM552379.CEL.gz
| | Sample_relation | Reanalysis of: GSM387743
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552380 | GPL570 |
|
YCC11 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC11
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552380
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552380/suppl/GSM552380.CEL.gz
| | Sample_relation | Reanalysis of: GSM387744
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552381 | GPL570 |
|
YCC16 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC16
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552381
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552381/suppl/GSM552381.CEL.gz
| | Sample_relation | Reanalysis of: GSM387745
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552382 | GPL570 |
|
YCC17 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC17
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552382
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552382/suppl/GSM552382.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552383 | GPL570 |
|
YCC18 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC18
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552383
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552383/suppl/GSM552383.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552384 | GPL570 |
|
YCC19 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC19
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552384
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552384/suppl/GSM552384.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552385 | GPL570 |
|
YCC2 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC2
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552385
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552385/suppl/GSM552385.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552386 | GPL570 |
|
YCC20 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC20
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552386
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552386/suppl/GSM552386.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552387 | GPL570 |
|
YCC3 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC3
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552387
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552387/suppl/GSM552387.CEL.gz
| | Sample_relation | Reanalysis of: GSM387746
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552388 | GPL570 |
|
YCC6 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC6
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552388
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552388/suppl/GSM552388.CEL.gz
| | Sample_relation | Reanalysis of: GSM387747
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552389 | GPL570 |
|
YCC7 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC7
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552389
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552389/suppl/GSM552389.CEL.gz
| | Sample_relation | Reanalysis of: GSM387749
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
|
GSM552390 | GPL570 |
|
YCC9 - 37 cell line study
|
gastric cancer cell line
|
cell line: YCC9
cell type: gastric cancer
|
Series of 37 (unique) gastric cancer cell lines
|
| Sample_geo_accession | GSM552390
| | Sample_status | Public on Jun 08 2010
| | Sample_submission_date | Jun 07 2010
| | Sample_last_update_date | Jun 07 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_growth_protocol_ch1 | Cancer cell lines were grown as per GC cell lines were obtained either from commercial sources or collaborators and cultured as recommended
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini spin columns (Qiagen) were used according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip® Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000 7G.
| | Sample_data_processing | The data were analyzed with R version 2.9.0, package affy. Data processing was performed by RMA normalization and Log 2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chia-Huey,,Ooi
| | Sample_contact_email | chia-huey.ooi@roche.com
| | Sample_contact_phone | +49 8856 60 19703
| | Sample_contact_institute | Roche Diagnostics GmbH
| | Sample_contact_address | Nonnenwald 2
| | Sample_contact_city | Penzberg
| | Sample_contact_zip/postal_code | 82377
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM552nnn/GSM552390/suppl/GSM552390.CEL.gz
| | Sample_series_id | GSE15460
| | Sample_series_id | GSE22183
| | Sample_data_row_count | 54675
| | |
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