Search results for the GEO ID: GSE22246  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM553711 | GPL570 |
|
Human ES cell line HSF1
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HSF1 (p82)
|
cell type: Human embryonic stem cell line
cell line: HSF1
|
Gene expression data from HSF1
|
| Sample_geo_accession | GSM553711
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553711/suppl/GSM553711_HSF1.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553712 | GPL570 |
|
Human ES cell line H9
|
H9 (p44)
|
cell type: Human embryonic stem cell line
cell line: H9
|
Gene expression data from H9
|
| Sample_geo_accession | GSM553712
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553712/suppl/GSM553712_H9.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553713 | GPL570 |
|
Human ES cell line H1
|
H1 (p60)
|
cell type: Human embryonic stem cell line
cell line: H1
|
Gene expression data from H1
|
| Sample_geo_accession | GSM553713
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553713/suppl/GSM553713_H1.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553714 | GPL570 |
|
Reprogrammed iPSC line hiPSC line 1
|
hiPSC line 1 (p82)
|
cell type: hiPSC cell line
cell line: hiPSC line 1
|
Gene expression data from hiPSC1 line 1
|
| Sample_geo_accession | GSM553714
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553714/suppl/GSM553714_hiPSC1.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553715 | GPL570 |
|
Reprogrammed iPSC line hiPSC line 2
|
hiPSC line 2 (p77)
|
cell type: hiPSC cell line
cell line: hiPSC line 2
|
Gene expression data from hiPSC line 2
|
| Sample_geo_accession | GSM553715
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553715/suppl/GSM553715_hiPSC2.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553716 | GPL570 |
|
Reprogrammed iPSC line hiPSC line 18
|
hiPSC line 18 (p77)
|
cell type: hiPSC cell line
cell line: hiPSC line 18
|
Gene expression data from hiPSC line 18
|
| Sample_geo_accession | GSM553716
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553716/suppl/GSM553716_hiPSC18.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553717 | GPL570 |
|
Reprogrammed iPSC line hiPSC 3975
|
hiPSC 3975 line (p24)
|
cell type: hiPSC cell line
cell line: hiPSC 3975
|
Gene expression data from hiPSC 3975
|
| Sample_geo_accession | GSM553717
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553717/suppl/GSM553717_hiPSC3975.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553718 | GPL570 |
|
Reprogrammed iPSC line hiPSC E
|
hiPSC 17914 line E (p22)
|
cell type: hiPSC cell line
cell line: hiPSC E
|
Gene expression data from hiPSC 17914 line E
|
| Sample_geo_accession | GSM553718
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553718/suppl/GSM553718_hiPSC_E.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553719 | GPL570 |
|
Reprogrammed iPSC line hiPSC G
|
hiPSC 17914 line G (p22)
|
cell type: hiPSC cell line
cell line: hiPSC G
|
Gene expression data from hiPSC 17914 line G
|
| Sample_geo_accession | GSM553719
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553719/suppl/GSM553719_hiPSC_G.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553720 | GPL570 |
|
Reprogrammed iPSC line hiPSC pMIP2
|
hiPSC pMIP line 2 (p6)
|
cell type: hiPSC cell line
cell line: hiPSC pMIP2
|
Gene expression data from hiPSC pMIP line 2
|
| Sample_geo_accession | GSM553720
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553720/suppl/GSM553720_pMIP2.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553721 | GPL570 |
|
Reprogrammed iPSC line 18 hiPSC pMIP3
|
hiPSC pMIP line 3 (p6)
|
cell type: Fibroblast cell line
cell line: hiPSC pMIP3
|
Gene expression data from hiPSC pMIP line 3
|
| Sample_geo_accession | GSM553721
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553721/suppl/GSM553721_pMIP3.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553722 | GPL570 |
|
Fibroblast cell line IMR90
|
IMR90 fibroblasts
|
cell type: Fibroblast cell line
cell line: IMR90
|
Gene expression data from IMR90 fibroblasts
|
| Sample_geo_accession | GSM553722
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553722/suppl/GSM553722_IMR90.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
|
GSM553723 | GPL570 |
|
Fibroblast cell line NHDF 17914
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NHDF 17914 fibroblasts
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cell type: Fibroblast cell line
cell line: NHDF 17914
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Gene expression data from NHDF 17914 fibroblasts
|
| Sample_geo_accession | GSM553723
| | Sample_status | Public on Aug 19 2010
| | Sample_submission_date | Jun 09 2010
| | Sample_last_update_date | Aug 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Reprogrammed Cell lines were treated as described in Lowry, et al. (PNAS, 2008)
| | Sample_growth_protocol_ch1 | Cell lines were cultured in hESC cell media for hESC and hiPSC lines (Lowry, et al. PNAS, 2008) and DMEM for the fibroblast line.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Stratagene's Lysis Buffer and extracted according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on human expression arrays
| | Sample_scan_protocol | Gene chips were analyzed using GeneChip® Scanner 3000.
| | Sample_data_processing | The raw data was processed using the RMA algorithm and was implemented using R (Bioconductor).
| | Sample_data_processing | The data is presented as a summary of the highest confidence probesets for each given RefSeq identifier. (See Materials and Methods, Chin, et al. Cell Stem Cell, 2009)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kathrin,,Plath
| | Sample_contact_institute | UCLA
| | Sample_contact_address | BOX 951737, 36-133 CHS
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095-1737
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM553nnn/GSM553723/suppl/GSM553723_NHDF17914.CEL.gz
| | Sample_series_id | GSE22246
| | Sample_data_row_count | 54675
| | |
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