Search results for the GEO ID: GSE22357  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM556451 | GPL339 |
|
Saline/OVA biological rep 1
|
mouse lung, 18 hrs after 2nd OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556451
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556451/suppl/GSM556451.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556452 | GPL339 |
|
Saline/OVA biological rep 2
|
mouse lung, 18 hrs after 2nd OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556452
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556452/suppl/GSM556452.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556453 | GPL339 |
|
Saline/OVA biological rep 3
|
mouse lung, 18 hrs after 2nd OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556453
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556453/suppl/GSM556453.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556454 | GPL339 |
|
NDEP/OVA biological rep 1
|
mouse lung, 18 hrs after 2nd NDEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556454
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556454/suppl/GSM556454.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556455 | GPL339 |
|
NDEP/OVA biological rep 2
|
mouse lung, 18 hrs after 2nd NDEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556455
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556455/suppl/GSM556455.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556456 | GPL339 |
|
NDEP/OVA biological rep 3
|
mouse lung, 18 hrs after 2nd NDEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556456
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556456/suppl/GSM556456.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556457 | GPL339 |
|
ADEP/OVA biological rep 1
|
mouse lung, 18 hrs after 2nd ADEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556457
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556457/suppl/GSM556457.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556458 | GPL339 |
|
ADEP/OVA biological rep 2
|
mouse lung, 18 hrs after 2nd ADEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556458
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556458/suppl/GSM556458.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556459 | GPL339 |
|
ADEP/OVA biological rep 3
|
mouse lung, 18 hrs after 2nd ADEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556459
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556459/suppl/GSM556459.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556460 | GPL339 |
|
CDEP/OVA biological rep 1
|
mouse lung, 18 hrs after 2nd CDEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556460
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556460/suppl/GSM556460.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556461 | GPL339 |
|
CDEP/OVA biological rep 2
|
mouse lung, 18 hrs after 2nd CDEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556461
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556461/suppl/GSM556461.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556462 | GPL339 |
|
CDEP/OVA biological rep 3
|
mouse lung, 18 hrs after 2nd CDEP/OVA intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: yes
|
|
| Sample_geo_accession | GSM556462
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556462/suppl/GSM556462.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556463 | GPL339 |
|
Saline biological rep 1
|
mouse lung, 18 hrs after 2nd saline intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556463
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556463/suppl/GSM556463.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556464 | GPL339 |
|
Saline biological rep 2
|
mouse lung, 18 hrs after 2nd saline intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556464
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556464/suppl/GSM556464.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556465 | GPL339 |
|
Saline biological rep 3
|
mouse lung, 18 hrs after 2nd saline intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556465
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556465/suppl/GSM556465.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556466 | GPL339 |
|
NDEP biological rep 1
|
mouse lung, 18 hrs after 2nd NDEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556466
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556466/suppl/GSM556466.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556467 | GPL339 |
|
NDEP biological rep 2
|
mouse lung, 18 hrs after 2nd NDEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556467
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556467/suppl/GSM556467.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556468 | GPL339 |
|
NDEP biological rep 3
|
mouse lung, 18 hrs after 2nd NDEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556468
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556468/suppl/GSM556468.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556469 | GPL339 |
|
ADEP biological rep 1
|
mouse lung, 18 hrs after 2nd ADEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556469
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556469/suppl/GSM556469.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556470 | GPL339 |
|
ADEP biological rep 2
|
mouse lung, 18 hrs after 2nd ADEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556470
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556470/suppl/GSM556470.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556471 | GPL339 |
|
ADEP biological rep 3
|
mouse lung, 18 hrs after 2nd ADEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556471
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556471/suppl/GSM556471.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556472 | GPL339 |
|
CDEP biological rep 1
|
mouse lung, 18 hrs after 2nd CDEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556472
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556472/suppl/GSM556472.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556473 | GPL339 |
|
CDEP biological rep 2
|
mouse lung, 18 hrs after 2nd CDEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556473
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556473/suppl/GSM556473.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
GSM556474 | GPL339 |
|
CDEP biological rep 3
|
mouse lung, 18 hrs after 2nd CDEP intranasal exposure
|
strain: BALB/C
sex: female
age: 8-10 weeks old
tissue: lung
sensitized: no
|
|
| Sample_geo_accession | GSM556474
| | Sample_status | Public on Jul 10 2010
| | Sample_submission_date | Jun 15 2010
| | Sample_last_update_date | Jun 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA from frozen lung tissue was isolated using Rneasy (Qiagen, Valencia,CA) following manufacture's protocol.
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse 430A gene chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Expression file creator in Gene Pattern was used to normalize cel files using the RMA method with quantile normalization, background correction, and median scaling
| | Sample_platform_id | GPL339
| | Sample_contact_name | Tina,,Stevens
| | Sample_contact_institute | UNC
| | Sample_contact_address | 138 marlowe ct
| | Sample_contact_city | carrboro
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27510
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM556nnn/GSM556474/suppl/GSM556474.CEL.gz
| | Sample_series_id | GSE22357
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
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|
