Search results for the GEO ID: GSE22418  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM557243 | GPL1261 |
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314.6trans_071906
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Mouse yolk sac tissues at E9.5, Notch1 activated
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strain: C57BL6
genotype: Tie2 Tg/0; ROSA +/N1ICD
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from Notch1-activated E9.5 mouse.
|
| Sample_geo_accession | GSM557243
| | Sample_status | Public on Jun 18 2010
| | Sample_submission_date | Jun 17 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0 mouse was mated with a female ROSA +/N1ICD and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM557nnn/GSM557243/suppl/GSM557243.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
| | |
|
GSM557244 | GPL1261 |
|
325.6trans_071906
|
Mouse yolk sac tissues at E9.5, Notch1 activated
|
strain: C57BL6
genotype: Tie2 Tg/0; ROSA +/N1ICD
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from Notch1-activated E9.5 mouse.
|
| Sample_geo_accession | GSM557244
| | Sample_status | Public on Jun 18 2010
| | Sample_submission_date | Jun 17 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0 mouse was mated with a female ROSA +/N1ICD and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM557nnn/GSM557244/suppl/GSM557244.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
| | |
|
GSM557245 | GPL1261 |
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325.5wt_071906
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Mouse yolk sac tissues at E9.5, wild type
|
strain: C57BL6
genotype: Tie2 0/0; ROSA +/+
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from wild-type E9.5 mouse.
|
| Sample_geo_accession | GSM557245
| | Sample_status | Public on Jun 18 2010
| | Sample_submission_date | Jun 17 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0 mouse was mated with a female ROSA +/N1ICD and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM557nnn/GSM557245/suppl/GSM557245.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
| | |
|
GSM557246 | GPL1261 |
|
325.7wt_071906
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Mouse yolk sac tissues at E9.5, wild type
|
strain: C57BL6
genotype: Tie2 0/0; ROSA +/+
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from wild-type E9.5 mouse.
|
| Sample_geo_accession | GSM557246
| | Sample_status | Public on Jun 18 2010
| | Sample_submission_date | Jun 17 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0 mouse was mated with a female ROSA +/N1ICD and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM557nnn/GSM557246/suppl/GSM557246.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
| | |
|
GSM560977 | GPL1261 |
|
1023.5mut_122107
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Mouse yolk sac tissues at E9.5, RBPJ loss-of-function
|
strain: mixed
genotype: Tie2-Cre; Rbpj flox/flox
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from RBPJ loss-of-function E9.5 mouse.
|
| Sample_geo_accession | GSM560977
| | Sample_status | Public on Jun 29 2010
| | Sample_submission_date | Jun 29 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0; Rbpj +/flox mouse was mated with a female Rbpj +/flox mouse and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560977/suppl/GSM560977.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
| | |
|
GSM560978 | GPL1261 |
|
1025.1mut_122107
|
Mouse yolk sac tissues at E9.5, RBPJ loss-of-function
|
strain: mixed
genotype: Tie2-Cre; Rbpj flox/flox
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from RBPJ loss-of-function E9.5 mouse.
|
| Sample_geo_accession | GSM560978
| | Sample_status | Public on Jun 29 2010
| | Sample_submission_date | Jun 29 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0; Rbpj +/flox mouse was mated with a female Rbpj +/flox mouse and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560978/suppl/GSM560978.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
| | |
|
GSM560979 | GPL1261 |
|
1025.2wt_122107
|
Mouse yolk sac tissues at E9.5, wild type
|
strain: mixed
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from wild-type E9.5 mouse.
|
| Sample_geo_accession | GSM560979
| | Sample_status | Public on Jun 29 2010
| | Sample_submission_date | Jun 29 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0; Rbpj +/flox mouse was mated with a female Rbpj +/flox mouse and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560979/suppl/GSM560979.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
| | |
|
GSM560980 | GPL1261 |
|
1025.3wt_122107
|
Mouse yolk sac tissues at E9.5, wild type
|
strain: mixed
tissue: yolk sac
age: embryonic day 9.5
|
Expression analysis of yolk sac from wild-type E9.5 mouse.
|
| Sample_geo_accession | GSM560980
| | Sample_status | Public on Jun 29 2010
| | Sample_submission_date | Jun 29 2010
| | Sample_last_update_date | Jun 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Embryos were dissected from the decidual tissue at E9.5. The yolk sac was separated from the embryo and the embryo was used for genotyping. Total RNA was isolated from the yolk sac.
| | Sample_growth_protocol_ch1 | A male Tie2 Tg/0; Rbpj +/flox mouse was mated with a female Rbpj +/flox mouse and the presence of a vaginal plug was taken as 0.5dpc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; MAS5.0 normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560980/suppl/GSM560980.CEL.gz
| | Sample_series_id | GSE22418
| | Sample_data_row_count | 45101
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