Search results for the GEO ID: GSE22535  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM559521 | GPL1261 |
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PBS followed by PBS (P+P)
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Mouse liver received PBS injection followed by PBS injection (P+P)
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strain: C57BL/6J
age: 2 months old
tissue: liver
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| Sample_geo_accession | GSM559521
| | Sample_status | Public on Dec 25 2010
| | Sample_submission_date | Jun 23 2010
| | Sample_last_update_date | Dec 25 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Four animal groups received the following treatments: phosphate-buffered saline (PBS) followed by PBS (P+P), ethylbenzene followed by PBS (E+P), PBS followed by ethylbenzene (P+E), and ethylbenzene followed by ethylbenzene (E+E). For the first exposure, ethylbenzene (7 mmol kg-1) or PBS (equivalent volume to ethylbenzene) was intraperitoneally injected twice at a 24 h interval. After 7 days of normal feeding, each animal group was treated with ethylbenzene (7 mmol kg-1) or PBS as the secondary exposure. The mice were sacrificed 5 h after the secondary exposure
| | Sample_growth_protocol_ch1 | Mice were fed in isolate chamber maintained at 23C with a cycle of 12 h light and shade.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using an RNeasy mini kit (Qiagen). The RNA integrity number (RIN) was determined using an Agilent Technologies 2100 bioanalyzer and A2100 expert software (ver. B0202SI238; Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 μg total RNA
| | Sample_hyb_protocol | Following fragmentation, the synthesized cRNA was hybridized for 16 hr at 45C on Affymetrix Mouse 430 2.0 Arrays. The arrays were washed and stained using an Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Cel files were analyzed with Affymetrix GeneChip Operating Software (version 1.3). All probe sets were scaled to a target signal of 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Minori,,Dateki
| | Sample_contact_email | mdateki@nifty.com
| | Sample_contact_department | Environmental Science Laboratory
| | Sample_contact_institute | Central Research Institute of Electric Power Industry
| | Sample_contact_address | 1646
| | Sample_contact_city | Abiko
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 270-1194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM559nnn/GSM559521/suppl/GSM559521.CEL.gz
| | Sample_series_id | GSE22535
| | Sample_data_row_count | 45101
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GSM559522 | GPL1261 |
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ethylbenzene followed by PBS (E+P)
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Mouse liver received ethylbenzene injection followed by PBS injection (E+P)
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strain: C57BL/6J
age: 2 months old
tissue: liver
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| Sample_geo_accession | GSM559522
| | Sample_status | Public on Dec 25 2010
| | Sample_submission_date | Jun 23 2010
| | Sample_last_update_date | Dec 25 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Four animal groups received the following treatments: phosphate-buffered saline (PBS) followed by PBS (P+P), ethylbenzene followed by PBS (E+P), PBS followed by ethylbenzene (P+E), and ethylbenzene followed by ethylbenzene (E+E). For the first exposure, ethylbenzene (7 mmol kg-1) or PBS (equivalent volume to ethylbenzene) was intraperitoneally injected twice at a 24 h interval. After 7 days of normal feeding, each animal group was treated with ethylbenzene (7 mmol kg-1) or PBS as the secondary exposure. The mice were sacrificed 5 h after the secondary exposure
| | Sample_growth_protocol_ch1 | Mice were fed in isolate chamber maintained at 23C with a cycle of 12 h light and shade.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using an RNeasy mini kit (Qiagen). The RNA integrity number (RIN) was determined using an Agilent Technologies 2100 bioanalyzer and A2100 expert software (ver. B0202SI238; Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 μg total RNA
| | Sample_hyb_protocol | Following fragmentation, the synthesized cRNA was hybridized for 16 hr at 45C on Affymetrix Mouse 430 2.0 Arrays. The arrays were washed and stained using an Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Cel files were analyzed with Affymetrix GeneChip Operating Software (version 1.3). All probe sets were scaled to a target signal of 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Minori,,Dateki
| | Sample_contact_email | mdateki@nifty.com
| | Sample_contact_department | Environmental Science Laboratory
| | Sample_contact_institute | Central Research Institute of Electric Power Industry
| | Sample_contact_address | 1646
| | Sample_contact_city | Abiko
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 270-1194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM559nnn/GSM559522/suppl/GSM559522.CEL.gz
| | Sample_series_id | GSE22535
| | Sample_data_row_count | 45101
| | |
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GSM559523 | GPL1261 |
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PBS followed by ethylbenzene (P+E)
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Mouse liver received PBS injection followed by ethylbenzene injection (P+E)
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strain: C57BL/6J
age: 2 months old
tissue: liver
|
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| Sample_geo_accession | GSM559523
| | Sample_status | Public on Dec 25 2010
| | Sample_submission_date | Jun 23 2010
| | Sample_last_update_date | Dec 25 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Four animal groups received the following treatments: phosphate-buffered saline (PBS) followed by PBS (P+P), ethylbenzene followed by PBS (E+P), PBS followed by ethylbenzene (P+E), and ethylbenzene followed by ethylbenzene (E+E). For the first exposure, ethylbenzene (7 mmol kg-1) or PBS (equivalent volume to ethylbenzene) was intraperitoneally injected twice at a 24 h interval. After 7 days of normal feeding, each animal group was treated with ethylbenzene (7 mmol kg-1) or PBS as the secondary exposure. The mice were sacrificed 5 h after the secondary exposure
| | Sample_growth_protocol_ch1 | Mice were fed in isolate chamber maintained at 23C with a cycle of 12 h light and shade.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using an RNeasy mini kit (Qiagen). The RNA integrity number (RIN) was determined using an Agilent Technologies 2100 bioanalyzer and A2100 expert software (ver. B0202SI238; Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 μg total RNA
| | Sample_hyb_protocol | Following fragmentation, the synthesized cRNA was hybridized for 16 hr at 45C on Affymetrix Mouse 430 2.0 Arrays. The arrays were washed and stained using an Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Cel files were analyzed with Affymetrix GeneChip Operating Software (version 1.3). All probe sets were scaled to a target signal of 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Minori,,Dateki
| | Sample_contact_email | mdateki@nifty.com
| | Sample_contact_department | Environmental Science Laboratory
| | Sample_contact_institute | Central Research Institute of Electric Power Industry
| | Sample_contact_address | 1646
| | Sample_contact_city | Abiko
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 270-1194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM559nnn/GSM559523/suppl/GSM559523.CEL.gz
| | Sample_series_id | GSE22535
| | Sample_data_row_count | 45101
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GSM559524 | GPL1261 |
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ethylbenzene followed by ethylbenzene (E+E)
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Mouse liver received ethylbenzene injection followed by ethylbenzene injection (E+E)
|
strain: C57BL/6J
age: 2 months old
tissue: liver
|
|
| Sample_geo_accession | GSM559524
| | Sample_status | Public on Dec 25 2010
| | Sample_submission_date | Jun 23 2010
| | Sample_last_update_date | Dec 25 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Four animal groups received the following treatments: phosphate-buffered saline (PBS) followed by PBS (P+P), ethylbenzene followed by PBS (E+P), PBS followed by ethylbenzene (P+E), and ethylbenzene followed by ethylbenzene (E+E). For the first exposure, ethylbenzene (7 mmol kg-1) or PBS (equivalent volume to ethylbenzene) was intraperitoneally injected twice at a 24 h interval. After 7 days of normal feeding, each animal group was treated with ethylbenzene (7 mmol kg-1) or PBS as the secondary exposure. The mice were sacrificed 5 h after the secondary exposure
| | Sample_growth_protocol_ch1 | Mice were fed in isolate chamber maintained at 23C with a cycle of 12 h light and shade.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was purified using an RNeasy mini kit (Qiagen). The RNA integrity number (RIN) was determined using an Agilent Technologies 2100 bioanalyzer and A2100 expert software (ver. B0202SI238; Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 μg total RNA
| | Sample_hyb_protocol | Following fragmentation, the synthesized cRNA was hybridized for 16 hr at 45C on Affymetrix Mouse 430 2.0 Arrays. The arrays were washed and stained using an Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Cel files were analyzed with Affymetrix GeneChip Operating Software (version 1.3). All probe sets were scaled to a target signal of 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Minori,,Dateki
| | Sample_contact_email | mdateki@nifty.com
| | Sample_contact_department | Environmental Science Laboratory
| | Sample_contact_institute | Central Research Institute of Electric Power Industry
| | Sample_contact_address | 1646
| | Sample_contact_city | Abiko
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 270-1194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM559nnn/GSM559524/suppl/GSM559524.CEL.gz
| | Sample_series_id | GSE22535
| | Sample_data_row_count | 45101
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