Search results for the GEO ID: GSE22619 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM560961 | GPL570 |
|
Healthy individual of twinpair #1
|
primary mucosal tissue, colon
|
twin pair: #1
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu1 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560961
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560961/suppl/GSM560961.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560962 | GPL570 |
|
Healthy individual of twinpair #4
|
primary mucosal tissue, colon
|
twin pair: #4
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu3 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560962
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560962/suppl/GSM560962.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560963 | GPL570 |
|
Healthy individual of twinpair #6
|
primary mucosal tissue, colon
|
twin pair: #6
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu4 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560963
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560963/suppl/GSM560963.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560964 | GPL570 |
|
Healthy individual of twinpair #7
|
primary mucosal tissue, colon
|
twin pair: #7
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu5 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560964
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560964/suppl/GSM560964.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560965 | GPL570 |
|
Healthy individual of twinpair #8
|
primary mucosal tissue, colon
|
twin pair: #8
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu6 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560965
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560965/suppl/GSM560965.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560966 | GPL570 |
|
Healthy individual of twinpair #9
|
primary mucosal tissue, colon
|
twin pair: #9
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu7 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560966
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560966/suppl/GSM560966.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560967 | GPL570 |
|
Healthy individual of twinpair #10
|
primary mucosal tissue, colon
|
twin pair: #10
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu8 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560967
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560967/suppl/GSM560967.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560968 | GPL570 |
|
Healthy individual of twinpair #12
|
primary mucosal tissue, colon
|
twin pair: #12
individual: healthy
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample Hu9 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560968
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560968/suppl/GSM560968.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560969 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #1
|
primary mucosal tissue, colon
|
twin pair: #1
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC1 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560969
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560969/suppl/GSM560969.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560970 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #4
|
primary mucosal tissue, colon
|
twin pair: #4
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC3 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560970
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560970/suppl/GSM560970.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560971 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #6
|
primary mucosal tissue, colon
|
twin pair: #6
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC4 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560971
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560971/suppl/GSM560971.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560972 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #7
|
primary mucosal tissue, colon
|
twin pair: #7
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC5 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560972
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560972/suppl/GSM560972.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560973 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #8
|
primary mucosal tissue, colon
|
twin pair: #8
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC6 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560973
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560973/suppl/GSM560973.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560974 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #9
|
primary mucosal tissue, colon
|
twin pair: #9
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC7 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560974
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560974/suppl/GSM560974.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560975 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #10
|
primary mucosal tissue, colon
|
twin pair: #10
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC8 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560975
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560975/suppl/GSM560975.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM560976 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #12
|
primary mucosal tissue, colon
|
twin pair: #12
individual: diseased
tissue: colon, mucosal tissue
mean age: 31.5 years old
|
corresponds to sample UC9 in table 1
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM560976
| Sample_status | Public on Jan 18 2012
| Sample_submission_date | Jun 29 2010
| Sample_last_update_date | Mar 09 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM560nnn/GSM560976/suppl/GSM560976.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM1012177 | GPL570 |
|
Healthy individual of twinpair #2
|
primary mucosal tissue, colon
|
twin pair: #2
individual: healthy individual, non-inflamed
tissue: primary mucosal tissue, colon
mean age: 31.5
|
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM1012177
| Sample_status | Public on Oct 01 2012
| Sample_submission_date | Oct 01 2012
| Sample_last_update_date | Oct 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012177/suppl/GSM1012177_02a_healthy.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM1012178 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #2
|
primary mucosal tissue, colon
|
twin pair: #2
individual: diseased individual, inflamed
tissue: primary mucosal tissue, colon
mean age: 31.5
|
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM1012178
| Sample_status | Public on Oct 01 2012
| Sample_submission_date | Oct 01 2012
| Sample_last_update_date | Oct 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012178/suppl/GSM1012178_02b_IBD.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM1012179 | GPL570 |
|
Healthy individual of twinpair #3
|
primary mucosal tissue, colon
|
twin pair: #3
individual: healthy individual, non-inflamed
tissue: primary mucosal tissue, colon
mean age: 31.5
|
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM1012179
| Sample_status | Public on Oct 01 2012
| Sample_submission_date | Oct 01 2012
| Sample_last_update_date | Oct 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012179/suppl/GSM1012179_03a_healthy.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
GSM1012180 | GPL570 |
|
Diseased individual (ulcerative colitis) of twinpair #3
|
primary mucosal tissue, colon
|
twin pair: #3
individual: diseased individual, inflamed
tissue: primary mucosal tissue, colon
mean age: 31.5
|
Gene expression data from whole biopsies, primary mucosal tissue
|
Sample_geo_accession | GSM1012180
| Sample_status | Public on Oct 01 2012
| Sample_submission_date | Oct 01 2012
| Sample_last_update_date | Oct 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA extracted using RNEasy (Qiagen) according to the manufacturers guidelines
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA (R Bioconductor, gcrma package).
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012180/suppl/GSM1012180_03b_IBD.CEL.gz
| Sample_series_id | GSE22619
| Sample_data_row_count | 54675
| |
|
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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