Search results for the GEO ID: GSE22759  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM562809 | GPL570 |
|
KMM-1
|
Multiple myeloma cell line
|
cell line: KMM-1
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the multiple myeloma cell line KMM-1
|
| Sample_geo_accession | GSM562809
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562809/suppl/GSM562809.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562810 | GPL570 |
|
KMS-11
|
Multiple myeloma cell line
|
cell line: KMS-11
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the multiple myeloma cell line KMS-11
|
| Sample_geo_accession | GSM562810
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562810/suppl/GSM562810.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562811 | GPL570 |
|
KMS-12-PE
|
Multiple myeloma cell line
|
cell line: KMS-12-PE
culturing medium: RPMI-1640, 20% FBS
|
Gene expression data from the multiple myeloma cell line KMS-12-PE
|
| Sample_geo_accession | GSM562811
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562811/suppl/GSM562811.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562812 | GPL570 |
|
KMS-12-BM
|
Multiple myeloma cell line
|
cell line: KMS-12-BM
culturing medium: RPMI-1640, 20% FBS
|
Gene expression data from the multiple myeloma cell line KMS-12-BM
|
| Sample_geo_accession | GSM562812
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562812/suppl/GSM562812.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562813 | GPL570 |
|
LP-1
|
Multiple myeloma cell line
|
cell line: LP-1
culturing medium: IMDM, 10% FBS
|
Gene expression data from the multiple myeloma cell line LP-1
|
| Sample_geo_accession | GSM562813
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562813/suppl/GSM562813.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562814 | GPL570 |
|
MM1S
|
Multiple myeloma cell line
|
cell line: MM1S
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the multiple myeloma cell line MM1S
|
| Sample_geo_accession | GSM562814
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562814/suppl/GSM562814.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562815 | GPL570 |
|
MOLP-2
|
Multiple myeloma cell line
|
cell line: MOLP-2
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the multiple myeloma cell line MOLP-2
|
| Sample_geo_accession | GSM562815
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562815/suppl/GSM562815.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562816 | GPL570 |
|
MOLP-8
|
Multiple myeloma cell line
|
cell line: MOLP-8
culturing medium: RPMI-1640, 20% FBS
|
Gene expression data from the multiple myeloma cell line MOLP-8
|
| Sample_geo_accession | GSM562816
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562816/suppl/GSM562816.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562817 | GPL570 |
|
NCI-H929
|
Multiple myeloma cell line
|
cell line: NCI-H929
culturing medium: RPMI-1640, 20% FBS, 2 mM L-glutamine, 1 mM sodium-pyrovate
|
Gene expression data from the multiple myeloma cell line NCI-H929
|
| Sample_geo_accession | GSM562817
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562817/suppl/GSM562817.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562818 | GPL570 |
|
OPM-2
|
Multiple myeloma cell line
|
cell line: OPM-2
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the multiple myeloma cell line OPM-2
|
| Sample_geo_accession | GSM562818
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562818/suppl/GSM562818.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562819 | GPL570 |
|
RPMI-8226
|
Multiple myeloma cell line
|
cell line: RPMI-8226
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the multiple myeloma cell line RPMI-8226
|
| Sample_geo_accession | GSM562819
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562819/suppl/GSM562819.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562820 | GPL570 |
|
RPMI-8226 LR5
|
Multiple myeloma cell line
|
cell line: RPMI-8226 LR5
culturing medium: RPMI-1640, 10% FBS, 5 μM melphalan was added once a week
|
Gene expression data from the multiple myeloma cell line RPMI-8226 LR5
|
| Sample_geo_accession | GSM562820
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562820/suppl/GSM562820.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562821 | GPL570 |
|
U-266
|
Multiple myeloma cell line
|
cell line: U-266
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the multiple myeloma cell line U-266
|
| Sample_geo_accession | GSM562821
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562821/suppl/GSM562821.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562822 | GPL570 |
|
AMO-1
|
Plasmacytoma cell line
|
cell line: AMO-1
culturing medium: RPMI-1640, 20% FBS
|
Gene expression data from the plasmacytoma cell line AMO-1
|
| Sample_geo_accession | GSM562822
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562822/suppl/GSM562822.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562823 | GPL570 |
|
DB
|
Diffuse large B-cell lymphoma cell line
|
cell line: DB
culturing medium: RPMI-1640, 20% FBS
|
Gene expression data from the diffuse large B-cell lymphoma cell line cell line DB
|
| Sample_geo_accession | GSM562823
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562823/suppl/GSM562823.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562824 | GPL570 |
|
HT
|
Diffuse large B-cell lymphoma cell line
|
cell line: HT
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the diffuse large B-cell lymphoma cell line cell line HT
|
| Sample_geo_accession | GSM562824
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562824/suppl/GSM562824.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562825 | GPL570 |
|
OCI-Ly7
|
Diffuse large B-cell lymphoma cell line
|
cell line: OCI-Ly7
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the diffuse large B-cell lymphoma cell line cell line OCI-Ly7
|
| Sample_geo_accession | GSM562825
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562825/suppl/GSM562825.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
GSM562826 | GPL570 |
|
SU-DHL-4
|
Diffuse large B-cell lymphoma cell line
|
cell line: SU-DHL-4
culturing medium: RPMI-1640, 10% FBS
|
Gene expression data from the diffuse large B-cell lymphoma cell line cell line SU-DHL-4
|
| Sample_geo_accession | GSM562826
| | Sample_status | Public on Apr 30 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Apr 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Untreated. The density of the culture was determined and 5 million cells were harvested and stored in 1 ml Trizol until RNA extraction.
| | Sample_growth_protocol_ch1 | The cell lines were subcultured 2 times per week. Subcultured 24 hours before harvest for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Invitrogen TRIzol Reagent combined with Qiagen RNeasy Mini kit. RNA quality was assessed using the Bioanalyser
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, P/N 702232 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 -18 hr at 45˚ C on GeneChip HG U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | .CEL files were background corrected and normalized by the just.rma function in the Bioconductor package affy
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Boegsted
| | Sample_contact_email | martin.boegsted@rn.dk
| | Sample_contact_department | Department of Haematology
| | Sample_contact_institute | Aalborg Hospital, Aarhus University Hospital
| | Sample_contact_address | Sdr. Skovvej 15
| | Sample_contact_city | Aalborg
| | Sample_contact_zip/postal_code | 9000
| | Sample_contact_country | Denmark
| | Sample_contact_web_link | www.blodet.dk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM562nnn/GSM562826/suppl/GSM562826.CEL.gz
| | Sample_series_id | GSE22759
| | Sample_data_row_count | 54675
| | |
|
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